Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_027383.1 Length=44613 Score E Sequences producing significant alignments: (Bits) Value seq7345 84.2 6e-12 >seq7345 Length=15758 Score = 84.2 bits (92), Expect = 6e-12 Identities = 232/348 (67%), Gaps = 6/348 (2%) Strand=Plus/Minus Query 12852 CCACCGTTGCCGTCGCTGACCAACTGATCGCAGCGCTGCGCAATCTGGTAGAGCGCGTAC 12911 ||||| || || || |||||||| |||||| ||| | |||| |||| | | | | Sbjct 8230 CCACCCTTCCCATCCGGCACCAACTGGTCGCAGTACTGGGAAATCCGGTACATCTCCCAA 8171 Query 12912 CGGTTTAACATTTGCGGTTTGATACGCCGACCGAGGCCGAAGCGCTCAGTAATACAAATA 12971 |||| || ||| | ||||| || ||| | |||||||| || | | || Sbjct 8170 CGGTCTACCATCCAGGCCTTGATGCGTTTACCCACACCGAAGCGATCGTTGGTCACGATG 8111 Query 12972 TCGTACCAGTGCCACGCAGGGTTATCCGTCCATGCGCGTTTAAACGTGCCGTCCCAGTCC 13031 ||||| |||||| | ||||| || ||||| || |||| | ||||||||||||| Sbjct 8110 TCGTAGGTGTGCCAGACCGGGTTGTCGGTCCAGGCCTGTTTCATCGTGCCGTCCCAGATG 8051 Query 13032 CCGGAATAGGTATGATTAATCGGGTCGTAGTTGTTCGGTATTAGAACTTTACGGCCTTTG 13091 ||| |||| | | ||| ||||| ||| |||| | | | || || || || | Sbjct 8050 CCGAGGTAGGCCCGGGTCTCCGGATCGTAATTGCTCGGCACTTGGACCTTCCGCCCGCGG 7991 Query 13092 CACTTGA-TG-GACACGCGCGGGATGTT-CTGGAACGCTTTGGCGTCGAACTCCACAAAC 13148 || | || || |||| || ||| ||||| ||| | ||| | ||| |||||| || || Sbjct 7990 CAGTCGACTGTGACA-GC-CGGAATGTTGCTGAACTGCTCT-GCGCTGAACTCGACGTAC 7934 Query 13149 AACAGCGCGGTTAGCGGGTAACGCAGGCGGGCGTCGATAATCTCCGTG 13196 | ||| || || |||||| ||||| |||||||| | ||| ||| Sbjct 7933 AGCAGGGCCGTGTTCGGGTAGCGCAGCTTCGCGTCGATCACCTCGGTG 7886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 142619443436400