Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq10593 84.2 2e-11 >seq10593 Length=94130 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 41005 GACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACCTT 41064 ||||||| ||| ||| || ||||| || || | | ||||||||| ||||| | Sbjct 2022 GACGTATCATAATGTCAGCCTGGAATCCGGTTGATATTCCAAAGATGGCATTACCACCAT 1963 Query 41065 GTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAA 41124 | ||| || || |||||||| ||| || ||| |||| ||| | ||||| | Sbjct 1962 GCCATGCTTTCGTACAATTTTACGTGAACAACGGGGAATTGTCCACGCAACTCTATCAGA 1903 Query 41125 GATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGT 41184 || | |||||||| | || || ||||||||||||||| ||| ||||||| || | Sbjct 1902 GAAGCGCGGACATGGGTTTGGGAGTGCCGTTTAACATAGCGTCGTATTCTCTGCTGACTT 1843 Query 41185 ATATGATTGCACACGTTAC 41203 | ||||| || || ||||| Sbjct 1842 ACATGATCGCTCATGTTAC 1824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397397213276680