Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq10234 145 6e-30 seq6771 132 4e-26 seq9711 105 6e-18 seq7200 105 6e-18 >seq10234 Length=192330 Score = 145 bits (160), Expect = 6e-30 Identities = 208/289 (72%), Gaps = 7/289 (2%) Strand=Plus/Plus Query 130691 ATTTCGTTGCGCATACTTTTATCGTACAATCCAA--GCTGTACAAGATCTTTTACCAAAT 130748 || ||||| ||||| || ||| | ||||| || || ||| |||| || || || Sbjct 1801 ATCTCGTTTTGCATATCTTCATCCCATAATCCTCTGGCAGT-CAA-ATCTCGTAGCAGAT 1858 Query 130749 GATTATTAATGATTTGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGA 130808 | ||| | ||| ||| || |||| | ||||| || ||||| || ||||||||| Sbjct 1859 GCGGATTGACGATGACAAACTCTCCAGATAATACGCGCCTCACGTAGATATTGCTCGTGT 1918 Query 130809 ACGGTTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATG 130868 ||||||||| ||||||||| || || || || ||||| || | || || ||||| || Sbjct 1919 ACGGTTCAATGGATTCGTTATTCCCTAAAATCTGTGCCGTCGAGGCCGTTGGCATAGGTG 1978 Query 130869 CCACTAATAGAGAATTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAAT 130928 | | ||| || ||||| | | |||||| ||| ||| || | ||||||||||||||||| Sbjct 1979 CTATTAAAAGCGAATTCCTCACTCCGTGCTTCGCGATCTTCCTCTTCAATTCATCCCAAT 2038 Query 130929 CCCATAGAGAGGTAGGTTTGACATTGTTCCACATATCAAATTGTAGTAT 130977 |||| ||| || ||||| || ||||||||| ||| |||| || || Sbjct 2039 CCCACAGATCTGTTGGTTTAAC---GTTCCACATGTCATATTGGAGGAT 2084 >seq6771 Length=7421 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||||||||| | ||||| || || || | || || || ||||| || ||||| || Sbjct 550 GCCTCCGCGAAGTCGCAAAACTAAGTGGAGTGTTGATTCCTTTTGGATGTTGTAATCTGA 491 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | | | | ||||| |||||||| || ||| |||| ||||||||||||||||| || Sbjct 490 AAGAGTCCTGCCATCTTCAAGCTGTTTGCCAGCGAAAATTAGACGCTGTTGATCCGGGGG 431 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | |||||||| || ||| || ||||| | | |||| ||| || | |||||||| Sbjct 430 AATTCCCTCTTTGTCCTGGATTTTAGCTTTCACGTTCTCTATAGTATCCGAAGCTTCAAC 371 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| || || |||| ||| || || |||||||| || ||||| ||||| Sbjct 370 TTCAAGGGTGATAGTTTTACCGGTGAGAGTTTTTACGAAGATCTGCAT 323 Score = 129 bits (142), Expect = 5e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||||||||| | |||| |||| ||| | |||||| || || || || || |||||| Sbjct 323 TGCCTCCGCGAAGACGCAGAACCAGATGAAGCGTAGATTCCTTCTGGATGTTATAGTCGG 264 Query 27079 TCAT-GTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGC 27137 | ||| || | ||||| || ||||| || || |||| |||||||| ||||| || Sbjct 263 AAAGAGTTCTGC-CATCTTCAAGTTGTTTGCCAGCAAAAATTAGACGCTGCTGATCTGGA 205 Query 27138 GGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCA 27197 || | || ||||| || |||||| ||| | | |||| |||||||| |||||| Sbjct 204 GGAATGCCTTCTTTGTCTTGGATCTTAGCTTTGACATTCTCTATAGTGTCTGAAGCTTCA 145 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||||| || || |||| ||| || || |||||||| || ||||| ||||| Sbjct 144 ACTTCGAGGGTGATAGTTTTACCAGTGAGAGTTTTTACGAAGATCTGCAT 95 >seq9711 Length=151070 Score = 105 bits (116), Expect = 6e-18 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||||||||||||||||||| || | || |||| ||||| ||||| || Sbjct 104444 GTGGATTCTTTTTGAATATTGTAGTCGGACAAAGTTCGTCCGTCCTCGAGTTGTTTGCCA 104385 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| |||| || | || ||||| || || | |||||||| || || || ||| Sbjct 104384 GCGAAAATCAGTCTTTGCTGATCGGGAGGAATGCCCTCTTTGTCTTGAATTTTCGCCTTC 104325 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | || || || ||||| ||||||| |||||| || | ||| Sbjct 104324 ACGTTCTCGATTGTGTCCGAAGCCTCGACCTCTAGTGTTATAGTTTTGCCAGTTAAAGTC 104265 Query 27231 TTCACAAAGATTTGCATAGCT 27251 || ||||| || |||||| || Sbjct 104264 TTGACAAATATCTGCATACCT 104244 >seq7200 Length=105881 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || ||||| || | || ||||| ||||| || ||||||||||| || || || Sbjct 105595 CCACCACGCAAACGGAGAACTAAATGCAACGTTGATTCTTTTTGAATGTTATAATCTGAA 105536 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| |||| || ||||| || |||||| | || | | ||| |||||||| || Sbjct 105535 AGCGTGCGGCCGTCCTCTAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGTGGG 105476 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || ||||| || ||| ||| | | | || | ||||||| |||||||| Sbjct 105475 ATTCCTTCCTTATCCTGAATTTTGGCTTTGACGTTCTCGATCGTGTCTGACGCTTCAACC 105416 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | || || | || ||||||| ||||| ||||| ||||||||| Sbjct 105415 TCCAATGTGATGGTCTTTCCCGTCAATGTTTTAACAAAAATTTGCATA 105368 Score = 104 bits (114), Expect = 2e-17 Identities = 164/234 (70%), Gaps = 1/234 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || || || || | ||||| || | || || || ||||| ||||||||||| | Sbjct 104911 CCGCCACGTAATCGAAGAACCAAGTGAAGAGTCGATTCCTTTTGGATATTGTAGTCAGAC 104852 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || ||||||| |||||||| || || | || | |||||| || || || || Sbjct 104851 AAGGTACGTCCGTCTTCAAGCTGTTTTCCAGCAAAGATCAAACGCTGCTGGTCAGGTGGG 104792 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || ||||| || ||||| ||||| | | || | |||||| | || ||||| Sbjct 104791 ATGCCTTCTTTGTCCTGAATCTTTGCTTTCACGTTCTCGATAGTGTCAGAAGCCTCAACC 104732 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCT 27254 || |||||||| | || || |||| || ||||| || || ||||||| |||| Sbjct 104731 TCAAGAGTTATGGTCTTTCCAGTCAACGTCTTCACGAAAATCTGCATAG-TGCT 104679 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || ||||| || | |||||||| || || || ||||| |||||||||||||| Sbjct 105823 CCACCACGCAAACGGAGAACCAAATGCAAGGTTGATTCTTTCTGAATATTGTAGTCAGAA 105764 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || | ||||| |||||||| ||||| | || | | ||||||||| || || Sbjct 105763 AGTGTACGACCATCTTCCAGCTGTTTTCCGGCAAAGATTAACCTCTGTTGATCTGGAGGG 105704 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || ||||| || ||| ||| | |||| | ||||| | || |||||| Sbjct 105703 ATTCCTTCCTTATCCTGAATTTTGGCTTTGACATTTTCGATCGTGTCCGATGCCTCAACT 105644 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | || || | || || |||| ||||| || || ||||||||| Sbjct 105643 TCCAATGTAATGGTCTTTCCAGTCAATGTTTTAACGAAAATTTGCATA 105596 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || ||||| || | || ||||| ||||| || ||||||||||| ||||| || Sbjct 105367 CCACCACGCAATCGGAGAACTAAATGCAACGTTGATTCTTTTTGAATGTTGTAATCAGAA 105308 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| |||| || || ||||| || || | || | | || |||||||| || Sbjct 105307 AGTGTGCGACCGTCCTCAAGTTGTTTGCCAGCAAAGATCAATCTTTGCTGATCCGGAGGA 105248 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || ||||| || || ||| | | |||| | ||||| | || || ||| Sbjct 105247 ATTCCTTCCTTATCTTGAATTTTTGCTTTGACGTTTTCGATCGTGTCCGAAGCCTCGACT 105188 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | || || | ||| || || |||||||| ||||| || ||||| Sbjct 105187 TCCAATGTGATGGTTTTTCCTGTGAGAGTTTTGACAAAAATCTGCAT 105141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424871549015232