Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_027995.1 Length=41666 Score E Sequences producing significant alignments: (Bits) Value seq8165 199 1e-46 >seq8165 Length=1351 Score = 199 bits (220), Expect = 1e-46 Identities = 384/562 (68%), Gaps = 7/562 (1%) Strand=Plus/Minus Query 8839 GGCGCGTCCATGCCGCCTGCGCGGAATTCTTCGGTTTGCAGGGTTAAGGTGGGCGGCGTG 8898 || ||| ||||||||| || |||| || ||||| | ||| || | |||| | ||| Sbjct 628 GGTGCGAGCATGCCGCCGGCCTGGAAGTCCTCGGTCTTCAGCGTCAGCTTGGGAGCGGTG 569 Query 8899 ACGCTCTCCACCTGGCCCGCGTAACCACGGCCATCAACAAATAAGTTGATGTTTTTCAAA 8958 | | || ||| ||| || ||||| ||| || || | || |||| |||||| Sbjct 568 AAGGTCATCACGCTGCCGGCATAACCCTTGCCGTCGACGTAGAAATTGAAGTTTTTG--- 512 Query 8959 ACGTCACGTGCG-GCCATTATTCGAATACCTCACTAATATAATCGTTGGTCAATTGGCTG 9017 || | |||| ||||| || ||| | ||| | || | |||| ||| || || Sbjct 511 -CGGATCTTGCGCGCCATGCTTAGAAGATCTCCGAGACGTAGTTGTTGTTCATGTGCATG 453 Query 9018 CGGAAGATAATGTGTTCAGCCGGATAAACAGGCGTGAAATCAAAATCAAAGTATACCTTA 9077 |||||| | | || ||| |||| || || ||||| || || || |||| | Sbjct 452 CGGAAGGTCAGCTGCTCACCCGGGTAGGTCGGGGTGAAGTCGAAGTCCCAGTAGAAGCGG 393 Query 9078 CCATCCGCGATCTGGTCAGCAGTATTTAAGTCAGGGTCAGCCCAACACGTGCCGCCAAGA 9137 || | || | ||| || | || | ||| ||||| |||| || ||||||| || Sbjct 392 CCCTGGGCCACGCTGTCCGCTGCGTTCAGGTCGGGGTCGACCCAGCAGTTGCCGCCGAGG 333 Query 9138 ATTGCGCCCAGGCTCACCAGGTTGCGCAGGTACGCGTTCACGCCTTCAATCACGTCATTG 9197 || || ||| || || |||| ||||||| | || || || || ||| |||||| | | Sbjct 332 ATCGCACCCTGGGTCTTCAGGCCGCGCAGGAAGGCATTGACACCCTCACGCACGTCGTCG 273 Query 9198 ACGTATTGTTTGGTGATGCCACGGTCTACGGCCCACAGGTGTGCACGCAGCAGACTGTCA 9257 ||||| ||| ||||||| ||||| ||||||||||| || || | || ||||| Sbjct 272 ACGTAGGTCTTGCTGATGCCGCGGTCGACGGCCCACAGATGGGCGGCCTCGAGGCTGTCG 213 Query 9258 TTGATGATGTCAGCCGTGCGAACCACGCACAGGAACGCCCATTTCTGATCGCTGGAACAG 9317 |||||||| || ||||| ||||| ||||||||| ||| ||||| |||||| | Sbjct 212 GCAATGATGTCGGCAGTGCGCACCACACACAGGAACTGCCACTTCTGGTCGCTGCTGGCG 153 Query 9318 GTGCGGTTGCCCCACAGGCGGAAACCGTCCTGGCGAATGATGGTGGTGAC-TTCGTTTTC 9376 || |||||||||||||||||||| || | | ||| |||||||| | || |||| || Sbjct 152 GTACGGTTGCCCCACAGGCGGAAGCCACCTTCGCGGATGATGGTCGCCACGTTCGATTGG 93 Query 9377 ATTCAGCAGGTTTGCACGGCTG 9398 ||||||||||| || |||||| Sbjct 92 -TTCAGCAGGTTGGCGCGGCTG 72 Score = 82.4 bits (90), Expect = 2e-11 Identities = 147/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 8149 GCCTGTAGGCGCTTATAGTCTTTCAGCGGCAGGCGGCGGATGTCATCAGGTGCCTGTTCA 8208 ||||| ||||| ||||| |||||||| | ||| | |||||| ||||| || Sbjct 1344 GCCTGCAGGCGGGCGTAGTCGCGCAGCGGCATCCTGCGCACGTCATCCGGTGCGATCTCG 1285 Query 8209 CACAGGTTGGCAAACGTCTGGATTTCGCGCGCAGCATCGCTGCCGCCCATGTCG--CTTG 8266 ||||||||||| | | || | | ||||||| |||||| | |||| ||||| || | Sbjct 1284 CACAGGTTGGCGATCATCCGCACTTCGCGCTGGGCATCGGT---GCCCTTGTCGTCCTGG 1228 Query 8267 CA-ATCTCCTGGTCAGCCACGGTGGGTTCGCGCATACGCAGCACGGAAACGTCAACGCCC 8325 | |||| ||| |||||||||| |||||||| |||||||| | ||| | ||| Sbjct 1227 TAGCGCTCCATGTCTTCCACGGTGGGCTCGCGCATGCGCAGCACTGCGGTGTCCATGCCA 1168 Query 8326 GCGATTTTCAGCGGTCGTGACAGGGTGATGTC 8357 || | |||| || || |||||||| || Sbjct 1167 TTGACCTGGCGCGGGCGGGAGAGGGTGATTTC 1136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133190402498496