Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq10234 91.5 2e-13 >seq10234 Length=192330 Score = 91.5 bits (100), Expect = 2e-13 Identities = 235/352 (67%), Gaps = 12/352 (3%) Strand=Plus/Plus Query 111076 ACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACG---GGATAAAAATT 111132 ||||||||||||||||| |||||| || || |||| | ||||||||||| Sbjct 2463 ACCAATAGGTCTGTGTCTTTGATTAGATGTTTTCG---TCTCTGGGATAGGATAAAAATT 2519 Query 111133 TCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTC 111192 |||||||||| | |||||| ||| ||||| |||| || | | |||||| || Sbjct 2520 AACGTCAATGACTTTATCTAGATTGCGGGTGACAATTTTTGCGACTGTTTTAAGTTTATC 2579 Query 111193 ATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATT 111252 | |||||||||| || ||| ||| ||| || | | || || ||||| ||||| Sbjct 2580 AAAATCAAAAGTCTTGGTATCTGTATTAACAAACATGTTGACAGCAATAGATGCTAAATT 2639 Query 111253 GCAAACAGC--CGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAA 111310 ||| ||||| | |||| | | | | || || | |||||| ||||| | ||| | Sbjct 2640 GCACACAGCAACTTCTC--CAGGACCAGAATATTCAACAATTTCAGTACACAGATTGCTA 2697 Query 111311 CTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTG-TTGCACGCATCCTTGTAGAG 111369 | || || || || | || || || || | || | | || || ||| || || || Sbjct 2698 CATTTGATAGTGCCTATATGCTGGTGATT-CGATTTTCGATTACATTGATCTTTATAAAG 2756 Query 111370 CATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACA 111421 ||| || || || || ||||| || ||| ||||||| || |||| ||| Sbjct 2757 CATATAAGGTGTTCCAGTCTCTACTTGGGATCTGAGAATGGCGATCCATACA 2808 Score = 86.0 bits (94), Expect = 8e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 110669 TTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGT 110728 ||||| ||||||||||| || | | | |||| |||||| || | ||||| ||| Sbjct 1864 TTGACGATGACAAACTCTCCAGATAATACGCGCCTCACGTAGATATTGCTCGTGTACGGT 1923 Query 110729 TCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATC 110788 |||| | |||| ||||| || || || ||||| || ||||| |||||||| ||||| || Sbjct 1924 TCAATGGATTCGTTATTCCCTAAAATCTGTGCCGTCGAGGCCGTTGGCATAGGTGCTATT 1983 Query 110789 AAAAG 110793 ||||| Sbjct 1984 AAAAG 1988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627936727545600