Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq5725 91.5 2e-13 seq5663 89.7 6e-13 >seq5725 Length=1648 Score = 91.5 bits (100), Expect = 2e-13 Identities = 203/295 (69%), Gaps = 10/295 (3%) Strand=Plus/Plus Query 166101 TCGGTACTGGACCGGCCGGGACCGGTAAGACGCTCCTGGCA-TG--CAACGCCGGTTCTC 166157 |||| | || |||||||| ||||| ||||| ||||||| || || ||| | || Sbjct 1339 TCGGCATCGGCCCGGCCGGTACCGGCAAGACCTTCCTGGCCGTGGCCAGCGCGG--TCGA 1396 Query 166158 ACGCACTGG-CGACGCGCAAGGTTGAACGTCTGATCCTGACGCGACCGGCCGTGAGCGTC 166216 | || ||| ||| ||| ||| | || ||||||||| ||| ||||| ||| | | Sbjct 1397 A-GCCCTGAACGAATCGCG-GGTGCAGCGCCTGATCCTGGTGCGCCCGGCGGTGGAGGCC 1454 Query 166217 GAGGAGCAGCACGGGTTCCTTCCCGGCAGTCTCGAGC-AGAAGATGGAGCCGTGGACTCG 166275 | ||| ||| || ||||| |||||| || |||| ||||| | || || | || Sbjct 1455 GGCGAGAAGCTGGGCTTCCTGCCCGGCGACCT-GAGCCAGAAGGTCGACCCCTACCTGCG 1513 Query 166276 ACCCATGTTCGACGCCCTGTACCGGTACATGAGCCCTAAGAAGGTTCGGGATCTCATGGA 166335 ||| ||| ||||||||||||| | ||| || ||||||| | || |||| Sbjct 1514 ACCGCTGTACGACGCCCTGTACGAGATGATGGGCGTGGAGAAGGTGGTCAAGCTGCTGGA 1573 Query 166336 AAATCACGTCATCGAGATCTGTCCTCTGGCGTACATGCGCGGTCGGACGTTCGAC 166390 || |||||||||||||| || ||||| ||||||||||| || ||| || || Sbjct 1574 GAAGAACGTCATCGAGATCGCGCCGCTGGCCTACATGCGCGGCCGCACGCTCAAC 1628 >seq5663 Length=2779 Score = 89.7 bits (98), Expect = 6e-13 Identities = 110/147 (75%), Gaps = 5/147 (3%) Strand=Plus/Minus Query 20666 ATCGACATGGCGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTC 20725 ||||||||||| ||||| || ||||||| |||||||||||| |||||||| | ||| Sbjct 1608 ATCGACATGGCCGCCGAGCGTGGCGCCTTCATCGACCAGTCGGCCTCGCTCAACCTGTTC 1549 Query 20726 ATGGAGAATCCGAGCCT-GGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGG 20784 ||||| | |||| | | |||| | || |||||| | ||||||| |||| | |||| Sbjct 1548 ATGGAAAGCCCGAACATCGGCG-CGATGTCTTCCATGTACATGTACGCCTGGAAGCAGGG 1490 Query 20785 GCTCAAGACGGGCATGTACTATCTGCG 20811 ||||||| || ||||| ||||| Sbjct 1489 CATCAAGAC---CACCTACTACCTGCG 1466 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 78211 GTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTCGACAGCTTGGCCAGACTCGGG 78270 ||||||| |||| |||||| |||||| || ||| |||| | | | | ||||| Sbjct 1481 GTCTTGATGCCCTGCTTCCAGGCGTACATGTACATGGAAGACATCGCGCCGATGTTCGGG 1540 Query 78271 TTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATGTACGCACCGCGGTCGGCCGCC 78330 | |||||||| | ||||||||| |||||||||||| | || || || ||||| ||| Sbjct 1541 CTTTCCATGAACAGGTTGAGCGAGGCCGACTGGTCGATGAAGGCGCCACGCTCGGCGGCC 1600 Query 78331 ATGTCGATGACCGA 78344 |||||||| | ||| Sbjct 1601 ATGTCGATCAGCGA 1614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548441588787840