Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22]
12,136 sequences; 257,976,923 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq5725 91.5 2e-13
seq5663 89.7 6e-13
>seq5725
Length=1648
Score = 91.5 bits (100), Expect = 2e-13
Identities = 203/295 (69%), Gaps = 10/295 (3%)
Strand=Plus/Plus
Query 166101 TCGGTACTGGACCGGCCGGGACCGGTAAGACGCTCCTGGCA-TG--CAACGCCGGTTCTC 166157
|||| | || |||||||| ||||| ||||| ||||||| || || ||| | ||
Sbjct 1339 TCGGCATCGGCCCGGCCGGTACCGGCAAGACCTTCCTGGCCGTGGCCAGCGCGG--TCGA 1396
Query 166158 ACGCACTGG-CGACGCGCAAGGTTGAACGTCTGATCCTGACGCGACCGGCCGTGAGCGTC 166216
| || ||| ||| ||| ||| | || ||||||||| ||| ||||| ||| | |
Sbjct 1397 A-GCCCTGAACGAATCGCG-GGTGCAGCGCCTGATCCTGGTGCGCCCGGCGGTGGAGGCC 1454
Query 166217 GAGGAGCAGCACGGGTTCCTTCCCGGCAGTCTCGAGC-AGAAGATGGAGCCGTGGACTCG 166275
| ||| ||| || ||||| |||||| || |||| ||||| | || || | ||
Sbjct 1455 GGCGAGAAGCTGGGCTTCCTGCCCGGCGACCT-GAGCCAGAAGGTCGACCCCTACCTGCG 1513
Query 166276 ACCCATGTTCGACGCCCTGTACCGGTACATGAGCCCTAAGAAGGTTCGGGATCTCATGGA 166335
||| ||| ||||||||||||| | ||| || ||||||| | || ||||
Sbjct 1514 ACCGCTGTACGACGCCCTGTACGAGATGATGGGCGTGGAGAAGGTGGTCAAGCTGCTGGA 1573
Query 166336 AAATCACGTCATCGAGATCTGTCCTCTGGCGTACATGCGCGGTCGGACGTTCGAC 166390
|| |||||||||||||| || ||||| ||||||||||| || ||| || ||
Sbjct 1574 GAAGAACGTCATCGAGATCGCGCCGCTGGCCTACATGCGCGGCCGCACGCTCAAC 1628
>seq5663
Length=2779
Score = 89.7 bits (98), Expect = 6e-13
Identities = 110/147 (75%), Gaps = 5/147 (3%)
Strand=Plus/Minus
Query 20666 ATCGACATGGCGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTC 20725
||||||||||| ||||| || ||||||| |||||||||||| |||||||| | |||
Sbjct 1608 ATCGACATGGCCGCCGAGCGTGGCGCCTTCATCGACCAGTCGGCCTCGCTCAACCTGTTC 1549
Query 20726 ATGGAGAATCCGAGCCT-GGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGG 20784
||||| | |||| | | |||| | || |||||| | ||||||| |||| | ||||
Sbjct 1548 ATGGAAAGCCCGAACATCGGCG-CGATGTCTTCCATGTACATGTACGCCTGGAAGCAGGG 1490
Query 20785 GCTCAAGACGGGCATGTACTATCTGCG 20811
||||||| || ||||| |||||
Sbjct 1489 CATCAAGAC---CACCTACTACCTGCG 1466
Score = 84.2 bits (92), Expect = 2e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 78211 GTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTCGACAGCTTGGCCAGACTCGGG 78270
||||||| |||| |||||| |||||| || ||| |||| | | | | |||||
Sbjct 1481 GTCTTGATGCCCTGCTTCCAGGCGTACATGTACATGGAAGACATCGCGCCGATGTTCGGG 1540
Query 78271 TTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATGTACGCACCGCGGTCGGCCGCC 78330
| |||||||| | ||||||||| |||||||||||| | || || || ||||| |||
Sbjct 1541 CTTTCCATGAACAGGTTGAGCGAGGCCGACTGGTCGATGAAGGCGCCACGCTCGGCGGCC 1600
Query 78331 ATGTCGATGACCGA 78344
|||||||| | |||
Sbjct 1601 ATGTCGATCAGCGA 1614
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548441588787840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |