Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22]
12,136 sequences; 257,976,923 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq993 156 5e-33
seq11665 82.4 8e-11
>seq993
Length=4284
Score = 156 bits (172), Expect = 5e-33
Identities = 248/351 (71%), Gaps = 15/351 (4%)
Strand=Plus/Minus
Query 124553 CTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGGC 124612
||||| ||| |||||||| ||| ||||| |||| ||| |||||||||||||||||
Sbjct 2704 CTGCAGCATGCGCCACATGCCTTCCACGTATTCCTTGGCGAAGCCCCAGTCGCGCTTGGC 2645
Query 124613 ATCCAGGTTTCCGAGCTCGATTG------GCTTGGCCGTCTTGTTCCACTCCGCCAAACC 124666
||||||||| || ||||| | ||| | || |||| || | |||| ||
Sbjct 2644 ATCCAGGTTCCCCAGCTCCAGGCAGTCCAGCTGGCCCAGCTTGATC---TTGGCCA--CC 2590
Query 124667 CAGT--GTAATCTTGCGCGTCACAAACTCGGAACCGCGTCGCTCAGACTCGTGGTTGAAC 124724
||| || |||||||| ||||| |||||| ||||| | ||| |||||||||
Sbjct 2589 GAGTCGGTGATCTTGCGGGTCACGAACTCGCGGCCGCGCAGTGGGCTCTCATGGTTGAAC 2530
Query 124725 AGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATAC 124784
|| ||||| | | |||| || |||| |||||||||||| ||| ||||| | |
Sbjct 2529 AGGATGCCGCTGGAACCAAAGATGTCGTAACTCTCGCGGTAGTTCACCGTGATCCAGTGC 2470
Query 124785 CCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGT-TTTCATTTTG 124843
| ||||||||| ||||||||| ||||| || |||||||| ||||||| | || |
Sbjct 2469 GCGTAGAGCTTGGCCACGCCATACGGGCTGCGTGGGTAGAACGGGGTGTCCTCCACCTGC 2410
Query 124844 GGTAGGTTGCTGAATCTTCCCAAACATCTCCGAAGTACCCGCCTGATAGAA 124894
|| | | ||| | ||| || ||||| |||||||| |||||| || ||
Sbjct 2409 GGCACG-GCCTGCACCTTGCCGAACATTTCCGAAGTCGACGCCTGGTAAAA 2360
>seq11665
Length=82268
Score = 82.4 bits (90), Expect = 8e-11
Identities = 140/201 (70%), Gaps = 4/201 (2%)
Strand=Plus/Plus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
||||||||||| | | || ||||||||||| || |||||||| | |||||||||||
Sbjct 2697 GTGAAAATGTATCTCGGACTGGCAGCATCCTTTCCGCCAGCAAGTCTTGTACCGAATTGA 2756
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
|| | || | | || || | |||||| ||||||||| || || || | || |
Sbjct 2757 CCGATAGGTTGGAGCAGATTAATATTGTTGCTGCCCACAAAATTCTGCGCGAGATTAATT 2816
Query 117425 ATCGT--ACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGC 117482
|| || | || ||| | ||||||||| || || |||| ||||| || || | |
Sbjct 2817 ATGGTCGCCATTAGAG--ACATCTCACCATGATGGTAAGCCGAATGCTCGGCAACCGATC 2874
Query 117483 CCGCCAGCTGAGCCACCTTCA 117503
|||||| || || || ||||
Sbjct 2875 CCGCCAATTGTGCGACTTTCA 2895
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547132987332800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |