Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq993 156 5e-33 seq11665 82.4 8e-11 >seq993 Length=4284 Score = 156 bits (172), Expect = 5e-33 Identities = 248/351 (71%), Gaps = 15/351 (4%) Strand=Plus/Minus Query 124553 CTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGGC 124612 ||||| ||| |||||||| ||| ||||| |||| ||| ||||||||||||||||| Sbjct 2704 CTGCAGCATGCGCCACATGCCTTCCACGTATTCCTTGGCGAAGCCCCAGTCGCGCTTGGC 2645 Query 124613 ATCCAGGTTTCCGAGCTCGATTG------GCTTGGCCGTCTTGTTCCACTCCGCCAAACC 124666 ||||||||| || ||||| | ||| | || |||| || | |||| || Sbjct 2644 ATCCAGGTTCCCCAGCTCCAGGCAGTCCAGCTGGCCCAGCTTGATC---TTGGCCA--CC 2590 Query 124667 CAGT--GTAATCTTGCGCGTCACAAACTCGGAACCGCGTCGCTCAGACTCGTGGTTGAAC 124724 ||| || |||||||| ||||| |||||| ||||| | ||| ||||||||| Sbjct 2589 GAGTCGGTGATCTTGCGGGTCACGAACTCGCGGCCGCGCAGTGGGCTCTCATGGTTGAAC 2530 Query 124725 AGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATAC 124784 || ||||| | | |||| || |||| |||||||||||| ||| ||||| | | Sbjct 2529 AGGATGCCGCTGGAACCAAAGATGTCGTAACTCTCGCGGTAGTTCACCGTGATCCAGTGC 2470 Query 124785 CCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGT-TTTCATTTTG 124843 | ||||||||| ||||||||| ||||| || |||||||| ||||||| | || | Sbjct 2469 GCGTAGAGCTTGGCCACGCCATACGGGCTGCGTGGGTAGAACGGGGTGTCCTCCACCTGC 2410 Query 124844 GGTAGGTTGCTGAATCTTCCCAAACATCTCCGAAGTACCCGCCTGATAGAA 124894 || | | ||| | ||| || ||||| |||||||| |||||| || || Sbjct 2409 GGCACG-GCCTGCACCTTGCCGAACATTTCCGAAGTCGACGCCTGGTAAAA 2360 >seq11665 Length=82268 Score = 82.4 bits (90), Expect = 8e-11 Identities = 140/201 (70%), Gaps = 4/201 (2%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||||||||| | | || ||||||||||| || |||||||| | ||||||||||| Sbjct 2697 GTGAAAATGTATCTCGGACTGGCAGCATCCTTTCCGCCAGCAAGTCTTGTACCGAATTGA 2756 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || | || | | || || | |||||| ||||||||| || || || | || | Sbjct 2757 CCGATAGGTTGGAGCAGATTAATATTGTTGCTGCCCACAAAATTCTGCGCGAGATTAATT 2816 Query 117425 ATCGT--ACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGC 117482 || || | || ||| | ||||||||| || || |||| ||||| || || | | Sbjct 2817 ATGGTCGCCATTAGAG--ACATCTCACCATGATGGTAAGCCGAATGCTCGGCAACCGATC 2874 Query 117483 CCGCCAGCTGAGCCACCTTCA 117503 |||||| || || || |||| Sbjct 2875 CCGCCAATTGTGCGACTTTCA 2895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547132987332800