Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq10593 114 1e-20 seq2842 95.1 1e-14 >seq10593 Length=94130 Score = 114 bits (126), Expect = 1e-20 Identities = 169/238 (71%), Gaps = 1/238 (0%) Strand=Plus/Plus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 |||||| |||| || || || || |||| ||||||||| || || || ||||||| || Sbjct 2188 CATGTCTTTGTATTCGGCGCCAAAGTGCCGCCACTGGAAACCATAGACAGGTCCCAAATC 2247 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342 ||||||||||| | ||| || |||||| || | | ||||| || | || Sbjct 2248 GCCCTCTTCCCTATCAGTGAAACCATAGGAGTCCAAGAAAGCCCGCGAACCATTCTCATC 2307 Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCA 30402 ||| || | || || || || | | |||||| |||||||| || ||| ||| ||||| Sbjct 2308 CCAAATATGAACACCTTTATCTGTCAACTCTTTCGAGTTTGTTGATCCTTTGATAAACCA 2367 Query 30403 CAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAG-GAGGGGAAA 30459 |||||| ||||| || || || ||| || || |||||||| || || | |||||| Sbjct 2368 CAGCAGTTCCTCAACTACTGCTCGCCAGAATACTCTCTTGGTTGTCAGTAATGGGAAA 2425 >seq2842 Length=3006 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 29896 GTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTG 29955 ||| | ||| ||||| ||||| | || || || || ||| | || |||||| | || Sbjct 1920 GTACAGGTGCGCGTCACCCAGCGTATGCACGAAGTCGCCCACGCCCAGGCCGGTGGCCTG 1861 Query 29956 AGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCAT 30015 |||| ||||| || || || | ||||||||||||||| || || || ||||| || Sbjct 1860 CGCCACCATGTGGGTCAGCAGCGCGTAGCTGGCGATGTTGAACGGCACACCGAGGAAGAT 1801 Query 30016 GTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACA 30075 ||| || | |||||| ||||| || ||||| ||||| |||||| ||||| | Sbjct 1800 GTCACCGCTGCGCTGGTACAGCTGGCAGCTGAGCTTGCCGTCCACCACGTAGAACTGGAA 1741 Query 30076 CATGGCGTGGCACGG 30090 || | ||||||||| Sbjct 1740 CAGGTTGTGGCACGG 1726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406250303644512