Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22]
12,136 sequences; 257,976,923 total letters
Query= NC_028461.1
Length=127011
Score E
Sequences producing significant alignments: (Bits) Value
seq10593 114 1e-20
seq2842 95.1 1e-14
>seq10593
Length=94130
Score = 114 bits (126), Expect = 1e-20
Identities = 169/238 (71%), Gaps = 1/238 (0%)
Strand=Plus/Plus
Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282
|||||| |||| || || || || |||| ||||||||| || || || ||||||| ||
Sbjct 2188 CATGTCTTTGTATTCGGCGCCAAAGTGCCGCCACTGGAAACCATAGACAGGTCCCAAATC 2247
Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342
||||||||||| | ||| || |||||| || | | ||||| || | ||
Sbjct 2248 GCCCTCTTCCCTATCAGTGAAACCATAGGAGTCCAAGAAAGCCCGCGAACCATTCTCATC 2307
Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCA 30402
||| || | || || || || | | |||||| |||||||| || ||| ||| |||||
Sbjct 2308 CCAAATATGAACACCTTTATCTGTCAACTCTTTCGAGTTTGTTGATCCTTTGATAAACCA 2367
Query 30403 CAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAG-GAGGGGAAA 30459
|||||| ||||| || || || ||| || || |||||||| || || | ||||||
Sbjct 2368 CAGCAGTTCCTCAACTACTGCTCGCCAGAATACTCTCTTGGTTGTCAGTAATGGGAAA 2425
>seq2842
Length=3006
Score = 95.1 bits (104), Expect = 1e-14
Identities = 138/195 (71%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 29896 GTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTG 29955
||| | ||| ||||| ||||| | || || || || ||| | || |||||| | ||
Sbjct 1920 GTACAGGTGCGCGTCACCCAGCGTATGCACGAAGTCGCCCACGCCCAGGCCGGTGGCCTG 1861
Query 29956 AGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCAT 30015
|||| ||||| || || || | ||||||||||||||| || || || ||||| ||
Sbjct 1860 CGCCACCATGTGGGTCAGCAGCGCGTAGCTGGCGATGTTGAACGGCACACCGAGGAAGAT 1801
Query 30016 GTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACA 30075
||| || | |||||| ||||| || ||||| ||||| |||||| ||||| |
Sbjct 1800 GTCACCGCTGCGCTGGTACAGCTGGCAGCTGAGCTTGCCGTCCACCACGTAGAACTGGAA 1741
Query 30076 CATGGCGTGGCACGG 30090
|| | |||||||||
Sbjct 1740 CAGGTTGTGGCACGG 1726
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406250303644512
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |