Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq6771 129 4e-25 seq7200 118 7e-22 seq9711 111 1e-19 >seq6771 Length=7421 Score = 129 bits (142), Expect = 4e-25 Identities = 171/232 (74%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 |||| || | ||| ||||| || || ||||| || |||||||| ||||| ||||||| Sbjct 551 CGCCTCCGCGAAGTCGCAAAACTAAGTGGAGTGTTGATTCCTTTTGGATGTTGTAATCTG 492 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 |||| || | | |||||||| ||||| || || || |||| ||||||||| ||||| | Sbjct 491 AAAGAGTCCTGCCATCTTCAAGCTGTTTGCCAGCGAAAATTAGACGCTGTTGATCCGGGG 432 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGT-CTTCGCTCTC 34655 | | |||||| ||||| ||| ||| | ||| ||| | || || | | ||| || Sbjct 431 GAATTCCCTCTTTGTCCTGGAT-TTTAGCTTTCACGTTCTCTATAGTATCCGAAGCT-TC 374 Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||||| | ||| || ||||||||||| | ||||| || || ||||||||| Sbjct 373 AACTTCAAGGGTGATAGTTTTACCGGTGAGAGTTTTTACGAAGATCTGCATG 322 Score = 118 bits (130), Expect = 7e-22 Identities = 168/231 (73%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | |||||||| |||| ||| || || ||||| || |||||||| || || Sbjct 322 GCCTCCGCGAAGACGCAGAACCAGATGAAGCGTAGATTCCTTCTGGATGTTATAGTCGGA 263 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| |||| | |||||||||||||| || ||||| |||| |||||| || || || || Sbjct 262 AAGAGTTCTGCCATCTTCAAGTTGTTTGCCAGCAAAAATTAGACGCTGCTGATCTGGAGG 203 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCT-TCGCTCTCC 34656 | || || |||||| |||| || | ||| || | || |||||| ||| || Sbjct 202 AATGCCTTCTTTGTCTTGGATC-TTAGCTTTGACATTCTCTATAGTGTCTGAAGCT-TCA 145 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||||| | ||| || |||||||| || | ||||| || || ||||||||| Sbjct 144 ACTTCGAGGGTGATAGTTTTACCAGTGAGAGTTTTTACGAAGATCTGCATG 94 >seq7200 Length=105881 Score = 118 bits (130), Expect = 7e-22 Identities = 143/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 || ||||||||||| ||||| |||||||| || |||| ||||||||||| || ||||| Sbjct 105331 TCTTTTTGAATGTTGTAATCAGAAAGTGTGCGACCGTCCTCAAGTTGTTTGCCAGCAAAG 105272 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-A 34634 || || | || || ||||| || | ||| ||||| ||| ||| ||||| ||| ||| Sbjct 105271 ATCAATCTTTGCTGATCCGGAGGAATTCCTTCCTTATCT-TGAATTTTTGCTTTGACGTT 105213 Query 34635 TAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 | || ||||| ||| ||||||| || || ||||| || || | ||||| || Sbjct 105212 TTCGATCGTGTCCGAAGCCTCGACTTCCAATGTGATGGTTTTTCCTGTGAGAGTTTTGAC 105153 Query 34695 AAAAATCTGCAT 34706 |||||||||||| Sbjct 105152 AAAAATCTGCAT 105141 Score = 104 bits (114), Expect = 1e-17 Identities = 142/193 (74%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 || ||||||||||||||||||||||| || || |||| || || || || ||||| || Sbjct 105559 TCTTTTTGAATGTTATAATCTGAAAGCGTGCGGCCGTCCTCTAGCTGCTTTCCGGCGAAG 105500 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 || || | ||| || ||||| || | ||| ||||| || ||| ||| | ||| ||| | Sbjct 105499 ATCAACCTCTGCTGATCCGGTGGGATTCCTTCCTTATC-CTGAATTTTGGCTTTGACGTT 105441 Query 34636 -AAAATTGTGTCT-TCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 || |||||| |||| || || |||| || || || || || || || ||||| | Sbjct 105440 CTCGATCGTGTCTGACGCT-TCAACCTCCAATGTGATGGTCTTTCCCGTCAATGTTTTAA 105382 Query 34694 CAAAAATCTGCAT 34706 ||||||| ||||| Sbjct 105381 CAAAAATTTGCAT 105369 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||| || ||||| |||||||| || || || || || | || || |||||||| Sbjct 104893 ACCAAGTGAAGAGTCGATTCCTTTTGGATATTGTAGTCAGACAAGGTACGTCCGTCTTCA 104834 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 || ||||| || ||||| || |||||||| ||||| || || | || || ||||| Sbjct 104833 AGCTGTTTTCCAGCAAAGATCAAACGCTGCTGGTCAGGTGGGATGCCTTCTTTGTCCTGA 104774 Query 34618 ATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 |||||| | ||| ||| | || ||||| ||| || || | ||||| || || Sbjct 104773 ATCTTT-GCTTTCACGTTCTCGATAGTGTCAGAAGCCTCAACCTCAAGAGTTATGGTCTT 104715 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || ||||| ||||| ||||||||||| Sbjct 104714 TCCAGTCAACGTCTTCACGAAAATCTGCAT 104685 Score = 84.2 bits (92), Expect = 1e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 |||||||| | || ||||||||||| ||||||||||| || || || | || ||| Sbjct 105121 ACCAAATGCAAGGTTGATTCCTTTTGAATATTATAATCTGAGAGAGTACGACCATCCTCA 105062 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 ||||| || || ||||| || || | ||| || || || || | || || || ||| || Sbjct 105061 AGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGTGGGATGCCTTCTTTATCT-TG 105003 Query 34618 ATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 | ||| | ||| || | ||| || || ||| || |||| || || || || Sbjct 105002 AATTTTCGCTTTGACATTCTCAATCGTATCAGAAGCCTCTACCTCCAAAGTGATGGTCTT 104943 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || | ||||| |||||||||||||| Sbjct 104942 TCCAGTCAGGGTTTTAACAAAAATCTGCAT 104913 >seq9711 Length=151070 Score = 111 bits (122), Expect = 1e-19 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| | ||| || ||||| |||||| || || |||||||||||||||||| Sbjct 104246 CCTCCACGAAGCCTCAAAACTAAATGCAGAGTGGATTCTTTCTGAATGTTATAATCTGAA 104187 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| || || || || ||||| || || || | ||| || ||||| || Sbjct 104186 AGCGTGCGGCCGTCCTCTAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGTGGG 104127 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCT-TCGCTCTCCA 34657 | ||| ||||| || ||| ||| | ||| ||| | || |||||| |||| || | Sbjct 104126 ATTCCTTCCTTATC-CTGAATTTTGGCTTTGACGTTCTCGATCGTGTCTGACGCT-TCAA 104069 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | |||| || || || || || || || ||||| || ||||| ||||| Sbjct 104068 CCTCCAATGTGATGGTCTTTCCCGTCAAGGTTTTGACGAAAATTTGCAT 104020 Score = 105 bits (116), Expect = 4e-18 Identities = 153/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 |||||||| | || || || |||||||| || || |||||||| || | ||||| Sbjct 104000 ACCAAATGCAAGGTCGATTCTTTCTGAATGTTGTAGTCGGAAAGTGTACGGCCATCTTCC 103941 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 |||||||| || || || ||||| | ||| || ||||| || | ||| ||||| ||| || Sbjct 103940 AGTTGTTTTCCAGCGAAGATTAATCTCTGCTGATCCGGAGGGATTCCTTCCTTATCT-TG 103882 Query 34618 ATCTTTTGTTTTAACGATAA-AATTGTGTCTTC-GCTCTCCACTTCCACGGTTATCGTTT 34675 | ||| | ||| || | ||||||||| ||| || || |||| || || |||| Sbjct 103881 AATTTTGGCTTTGACATTTTCAATTGTGTCCGAAGCT-TCAACCTCCAATGTAATGGTTT 103823 Query 34676 TACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || || | ||||| |||||||||||||| Sbjct 103822 TGCCAGTGAGAGTTTTAACAAAAATCTGCAT 103792 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| | ||| |||||||| | || ||| || |||||||| || |||||| Sbjct 103790 CCACCACGAAGCCTCAAGACCAAATGTAACGTAGACTCTTTCTGAATGTTGTAGTCTGAA 103731 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || | ||||| || ||||| |||||||| ||||| | |||||| || || || Sbjct 103730 AGTGTACGACCATCTTCCAGCTGTTTTCCGGCAAAGATTAACCTCTGTTGATCTGGAGGG 103671 Query 34600 ACTCCCTCCTTGTC 34613 | ||| ||||| || Sbjct 103670 ATTCCTTCCTTATC 103657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314683049131688