Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_028696.2 Length=41338 Score E Sequences producing significant alignments: (Bits) Value seq2247 102 2e-17 >seq2247 Length=25848 Score = 102 bits (112), Expect = 2e-17 Identities = 262/393 (67%), Gaps = 17/393 (4%) Strand=Plus/Plus Query 16916 TAGCCCGTCGCCGGCACCCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCTG 16975 || ||||| | ||| ||||| || ||||||||| | ||| | ||||||||| || | Sbjct 25423 TAACCCGTTGACGGGACCCACTCCGACTTCAGACTGCGGAACAGGCGCTCCATCGGCGAG 25482 Query 16976 TTATCCCAGCAGTTTCCACGCCGACTCATACTCTGCCTGATCCGGTATCTCCACAGTAAC 17035 ||||||||||| || || || |||||||| |||||| ||||| || | ||| || Sbjct 25483 TTATCCCAGCAATTCCCTCGGCGACTCATGCTCTGCTGCATCCGATAGCGCCAGAGCCGT 25542 Query 17036 TGCCGGAACTGCCTGCTCGTATAATGACTGCCTTGATCGCTGTGGAACATCACCCCGACG 17095 ||||| ||| | | ||| | || || ||||| || || ||||||| |||| Sbjct 25543 TGCCGAAACAGGCGGCTGGCGTACTGGCTGCCCTGGTCTGAATGGAACAGCACCTGCTGT 25602 Query 17096 GGCTTACCACGGGTTTCCCATGCCATTTCCAGTGCTTTCATGGTAAGCCTGCTGTCCGGC 17155 ||||| || || ||| | ||||| ||||| || || || || | |||||| Sbjct 25603 GGCTTGCCGCGCTGTTCGTAGGCCATGTCCAGGGCCTTGATCACCAGTTCGGCATCCGGC 25662 Query 17156 GAGAACGACATGGCCCAGCC---CACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCG 17212 | ||| | |||||||| ||| | | | ||| || || || |||| Sbjct 25663 TTGGCCGAGAACGCCCAGCCGATCACCCG---CCGGGTATGCAGATCCAGCACCGCGGCC 25719 Query 17213 AGGTACGCCCAGCG--CTTACCCGTCCAGATATAGGTCACATCACCGCACCACACCTGAT 17270 ||||| ||| || ||| || ||||| ||||| | || || ||||||||||||| Sbjct 25720 AGGTAGTGCCAACGGCCTT--GCGCCCAGACGTAGGTGATGTCGCCACACCACACCTGAT 25777 Query 17271 TTG---GCTCGGTCACGGCGAACT-GCCGTTCA 17299 | | |||||||| ||||| | || ||||| Sbjct 25778 TGGGATGCTCGGTC---GCGAATTCGCGGTTCA 25807 Score = 102 bits (112), Expect = 2e-17 Identities = 262/393 (67%), Gaps = 17/393 (4%) Strand=Plus/Plus Query 39541 TAGCCCGTCGCCGGCACCCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCTG 39600 || ||||| | ||| ||||| || ||||||||| | ||| | ||||||||| || | Sbjct 25423 TAACCCGTTGACGGGACCCACTCCGACTTCAGACTGCGGAACAGGCGCTCCATCGGCGAG 25482 Query 39601 TTATCCCAGCAGTTTCCACGCCGACTCATACTCTGCCTGATCCGGTATCTCCACAGTAAC 39660 ||||||||||| || || || |||||||| |||||| ||||| || | ||| || Sbjct 25483 TTATCCCAGCAATTCCCTCGGCGACTCATGCTCTGCTGCATCCGATAGCGCCAGAGCCGT 25542 Query 39661 TGCCGGAACTGCCTGCTCGTATAATGACTGCCTTGATCGCTGTGGAACATCACCCCGACG 39720 ||||| ||| | | ||| | || || ||||| || || ||||||| |||| Sbjct 25543 TGCCGAAACAGGCGGCTGGCGTACTGGCTGCCCTGGTCTGAATGGAACAGCACCTGCTGT 25602 Query 39721 GGCTTACCACGGGTTTCCCATGCCATTTCCAGTGCTTTCATGGTAAGCCTGCTGTCCGGC 39780 ||||| || || ||| | ||||| ||||| || || || || | |||||| Sbjct 25603 GGCTTGCCGCGCTGTTCGTAGGCCATGTCCAGGGCCTTGATCACCAGTTCGGCATCCGGC 25662 Query 39781 GAGAACGACATGGCCCAGCC---CACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCG 39837 | ||| | |||||||| ||| | | | ||| || || || |||| Sbjct 25663 TTGGCCGAGAACGCCCAGCCGATCACCCG---CCGGGTATGCAGATCCAGCACCGCGGCC 25719 Query 39838 AGGTACGCCCAGCG--CTTACCCGTCCAGATATAGGTCACATCACCGCACCACACCTGAT 39895 ||||| ||| || ||| || ||||| ||||| | || || ||||||||||||| Sbjct 25720 AGGTAGTGCCAACGGCCTT--GCGCCCAGACGTAGGTGATGTCGCCACACCACACCTGAT 25777 Query 39896 TTG---GCTCGGTCACGGCGAACT-GCCGTTCA 39924 | | |||||||| ||||| | || ||||| Sbjct 25778 TGGGATGCTCGGTC---GCGAATTCGCGGTTCA 25807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132140953761600