Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22]
12,136 sequences; 257,976,923 total letters
Query= NC_028696.2
Length=41338
Score E
Sequences producing significant alignments: (Bits) Value
seq2247 102 2e-17
>seq2247
Length=25848
Score = 102 bits (112), Expect = 2e-17
Identities = 262/393 (67%), Gaps = 17/393 (4%)
Strand=Plus/Plus
Query 16916 TAGCCCGTCGCCGGCACCCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCTG 16975
|| ||||| | ||| ||||| || ||||||||| | ||| | ||||||||| || |
Sbjct 25423 TAACCCGTTGACGGGACCCACTCCGACTTCAGACTGCGGAACAGGCGCTCCATCGGCGAG 25482
Query 16976 TTATCCCAGCAGTTTCCACGCCGACTCATACTCTGCCTGATCCGGTATCTCCACAGTAAC 17035
||||||||||| || || || |||||||| |||||| ||||| || | ||| ||
Sbjct 25483 TTATCCCAGCAATTCCCTCGGCGACTCATGCTCTGCTGCATCCGATAGCGCCAGAGCCGT 25542
Query 17036 TGCCGGAACTGCCTGCTCGTATAATGACTGCCTTGATCGCTGTGGAACATCACCCCGACG 17095
||||| ||| | | ||| | || || ||||| || || ||||||| ||||
Sbjct 25543 TGCCGAAACAGGCGGCTGGCGTACTGGCTGCCCTGGTCTGAATGGAACAGCACCTGCTGT 25602
Query 17096 GGCTTACCACGGGTTTCCCATGCCATTTCCAGTGCTTTCATGGTAAGCCTGCTGTCCGGC 17155
||||| || || ||| | ||||| ||||| || || || || | ||||||
Sbjct 25603 GGCTTGCCGCGCTGTTCGTAGGCCATGTCCAGGGCCTTGATCACCAGTTCGGCATCCGGC 25662
Query 17156 GAGAACGACATGGCCCAGCC---CACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCG 17212
| ||| | |||||||| ||| | | | ||| || || || ||||
Sbjct 25663 TTGGCCGAGAACGCCCAGCCGATCACCCG---CCGGGTATGCAGATCCAGCACCGCGGCC 25719
Query 17213 AGGTACGCCCAGCG--CTTACCCGTCCAGATATAGGTCACATCACCGCACCACACCTGAT 17270
||||| ||| || ||| || ||||| ||||| | || || |||||||||||||
Sbjct 25720 AGGTAGTGCCAACGGCCTT--GCGCCCAGACGTAGGTGATGTCGCCACACCACACCTGAT 25777
Query 17271 TTG---GCTCGGTCACGGCGAACT-GCCGTTCA 17299
| | |||||||| ||||| | || |||||
Sbjct 25778 TGGGATGCTCGGTC---GCGAATTCGCGGTTCA 25807
Score = 102 bits (112), Expect = 2e-17
Identities = 262/393 (67%), Gaps = 17/393 (4%)
Strand=Plus/Plus
Query 39541 TAGCCCGTCGCCGGCACCCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCTG 39600
|| ||||| | ||| ||||| || ||||||||| | ||| | ||||||||| || |
Sbjct 25423 TAACCCGTTGACGGGACCCACTCCGACTTCAGACTGCGGAACAGGCGCTCCATCGGCGAG 25482
Query 39601 TTATCCCAGCAGTTTCCACGCCGACTCATACTCTGCCTGATCCGGTATCTCCACAGTAAC 39660
||||||||||| || || || |||||||| |||||| ||||| || | ||| ||
Sbjct 25483 TTATCCCAGCAATTCCCTCGGCGACTCATGCTCTGCTGCATCCGATAGCGCCAGAGCCGT 25542
Query 39661 TGCCGGAACTGCCTGCTCGTATAATGACTGCCTTGATCGCTGTGGAACATCACCCCGACG 39720
||||| ||| | | ||| | || || ||||| || || ||||||| ||||
Sbjct 25543 TGCCGAAACAGGCGGCTGGCGTACTGGCTGCCCTGGTCTGAATGGAACAGCACCTGCTGT 25602
Query 39721 GGCTTACCACGGGTTTCCCATGCCATTTCCAGTGCTTTCATGGTAAGCCTGCTGTCCGGC 39780
||||| || || ||| | ||||| ||||| || || || || | ||||||
Sbjct 25603 GGCTTGCCGCGCTGTTCGTAGGCCATGTCCAGGGCCTTGATCACCAGTTCGGCATCCGGC 25662
Query 39781 GAGAACGACATGGCCCAGCC---CACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCG 39837
| ||| | |||||||| ||| | | | ||| || || || ||||
Sbjct 25663 TTGGCCGAGAACGCCCAGCCGATCACCCG---CCGGGTATGCAGATCCAGCACCGCGGCC 25719
Query 39838 AGGTACGCCCAGCG--CTTACCCGTCCAGATATAGGTCACATCACCGCACCACACCTGAT 39895
||||| ||| || ||| || ||||| ||||| | || || |||||||||||||
Sbjct 25720 AGGTAGTGCCAACGGCCTT--GCGCCCAGACGTAGGTGATGTCGCCACACCACACCTGAT 25777
Query 39896 TTG---GCTCGGTCACGGCGAACT-GCCGTTCA 39924
| | |||||||| ||||| | || |||||
Sbjct 25778 TGGGATGCTCGGTC---GCGAATTCGCGGTTCA 25807
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 132140953761600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |