Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_028796.1 Length=49203 Score E Sequences producing significant alignments: (Bits) Value seq7345 105 2e-18 >seq7345 Length=15758 Score = 105 bits (116), Expect = 2e-18 Identities = 192/277 (69%), Gaps = 12/277 (4%) Strand=Plus/Plus Query 30060 GCTGCTCATCGACGGCGACCCGTGGTTCGTCGCCGGTGACGTCGCCCGTGCCCTCGGCTA 30119 |||||| ||||||||||| || ||||||||||| | ||| |||| || ||| || Sbjct 4481 GCTGCTGATCGACGGCGATCCTTGGTTCGTCGCTGCCGACATCGCGGCAGCTCTCCAATA 4540 Query 30120 CCGCGACGCCCACAACCTCGGGCGCCGCCTCGACGAGGACGAGAAGGGTACTCACTCACT 30179 |||||| | |||| | | || ||||||||||||||| ||||||||||| | Sbjct 4541 CCGCGATTCGTTCAACATGTGCCGAAACCTCGACGAGGACGAAAAGGGTACTCAGATTGT 4600 Query 30180 GAGTACCCCGGGCGGCACCCAG--AACGCCGGTGTCATCAGCGAGTCGGGGCTCTACACC 30237 |||||||| || || ||||| || || || | |||| |||||| || || ||| | Sbjct 4601 GAGTACCCTCGGTGGAGCCCAGGAAATGCTGGCG--ATCAACGAGTCTGGCCTATACGCG 4658 Query 30238 GCGATCCTCGGCAGCCAGGTTCATCGCGTTCGCGA----GTTCAAACGCTGGGTTACCCG 30293 || ||||| | || | || | | |||| ||||| ||||| ||| | Sbjct 4659 GCCATCCTGCGTAGTCGCAAGCA-AGAG---GCGAAGCTCTTCAAGAAGTGGGTAACCGG 4714 Query 30294 CGAGGTGCTGCCCGCGATCCGCAACACCGGTTCCTAC 30330 ||| ||||| || || |||||||| |||||| |||| Sbjct 4715 CGAAGTGCTCCCAGCCATCCGCAAGACCGGTCGCTAC 4751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157305326675280