Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_028827.1 Length=50165 Score E Sequences producing significant alignments: (Bits) Value seq3733 179 1e-40 >seq3733 Length=4163 Score = 179 bits (198), Expect = 1e-40 Identities = 268/377 (71%), Gaps = 10/377 (3%) Strand=Plus/Plus Query 40044 CCAGCACGCGGGCCGCGTC---CTTCATCGCGTTGCGCGCCTTGATCCGGCCGAAGGTCC 40100 ||||||||||| | | ||| | || ||| ||| ||| || | |||| |||| Sbjct 2382 CCAGCACGCGGCCGGAGTCGCGCACCACCGCCTTGGCGGCCATGGT---GCCGTAGGTGA 2438 Query 40101 CGATCTGTGCGACCTTGTCGGCCCCGTACTTCTCGGTGACGTACCGGATGACCTCGCCGC 40160 |||||| ||| ||| ||||||||| | |||||| ||| || ||| ||| Sbjct 2439 TGATCTGGCTGACGCGCTCGCGCCCGTACTTGCGTGCGACGTAGTCGATCACTTCGTCGC 2498 Query 40161 GACGCCGGTCATC--GAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAG 40218 | || | ||| |||||||||||| | ||||||||| |||||||| || || || || Sbjct 2499 GGCG--GTCCATGCAGAAGTCGATGTCGAAGTCGGGCATCGACACGCGTTCCGGATTGAG 2556 Query 40219 GAACCGCTCGAAGATGAGCCCGTGCTCCAGTGGATCGAGGTCGGTGATCCCGAGGCAGTA 40278 ||| |||||||| | || || | ||| || || |||||||||||| || | Sbjct 2557 GAAGCGCTCGAACAGCAGGTTGTACGGCAGCGGGTCCAGGTCGGTGATCTTCAGCGCCCA 2616 Query 40279 GGCGACCAGCGAACCGGCTGCCGAGCCTCGCCCAGGACCGACCCACACGCCGTTCTCCTT 40338 || |||||||||||||| |||| || || || ||||||| | | ||| | | ||| Sbjct 2617 CGCCACCAGCGAACCGGCACCCGAACCACGGCCGGGACCGATCGGGATGCCCTGGTTCTT 2676 Query 40339 GGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAAGCCCATCTGGATGAT 40398 | |||| |||||||||||| |||| |||||||||| |||||||||||||| |||||| Sbjct 2677 GCCCCACTGGATGAAGTCGGCCACGATCAGGAAGTAGCCCGGGAAGCCCATCTTGATGAT 2736 Query 40399 CATGTCGATCTCGTACT 40415 ||| || |||| ||| Sbjct 2737 GGTGTTGAGCTCGAACT 2753 Score = 131 bits (144), Expect = 5e-26 Identities = 275/408 (67%), Gaps = 8/408 (2%) Strand=Plus/Plus Query 38936 GGCGGCAGGACCCGCAGGCCCATGCGCCGCGCCTCGCCGAGGTACGTGGCCATCTTGTTC 38995 |||||||| || |||||| | ||| ||||| | ||| | | ||| ||||| Sbjct 1228 GGCGGCAGCACGGTCAGGCCTAGATTGCGCACCTCGTCAAGGAAGCCGACCACCTTGTCG 1287 Query 38996 TTGTCGTCGCCCACCGAGGTGAGCACGGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTC 39055 ||| ||| |||||| ||| ||| |||||| |||||||||| ||||| |||| Sbjct 1288 GTGTTGTCCAGGTCCGAGGACAGCGTGGCTGCCATGAACTCGGCCGGATAGTGGCGCTTC 1347 Query 39056 AGGTACGCCGTGCGGTAGGCGATGAGCCCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCG 39115 || | || || ||||| || || |||| || || | ||||| ||||||||| || Sbjct 1348 AGCCAGGCGGTCTGGTAGCTGACCAGTGCGTATGCAGCGGCGTGCGACTTGTTGAAACCG 1407 Query 39116 TACCCGGCGAAGGGTACGAGCACGTCCCACACCGCCTGGA---TGGCGCTGTCCGAGTAG 39172 || |||||||| | | || ||| | | || | | |||| |||| | | Sbjct 1408 TAGCCGGCGAACTTCTCCATCAGGTCGAAGATGGCATCGGCCTTGGCCTCGTCCACGCCG 1467 Query 39173 -CCTCGCTCGCGCGCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTT 39231 ||| | |||| || | ||||| || || | |||||||| | | ||| Sbjct 1468 TCCTTGGCTGCGCCTTCGC----GGAAGATCTCGCGGTGCTTGGCCATTTCGGCAGGCAC 1523 Query 39232 CTTCTTGCCCATGGCCCGACGCAGCAGGTCGGCCTGGCCCAGGCTGTAGCCAGCGAGGAT 39291 |||||||||||| || || |||||||||||||| |||||| |||||| ||| ||| Sbjct 1524 CTTCTTGCCCATCGCGCGGCGCAGCAGGTCGGCGCCGCCCAGCGAGTAGCCGCCGACGAT 1583 Query 39292 CTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGATGAGCCCGTACGT 39339 ||||||| || | ||||||||||||||| | |||| ||||| || Sbjct 1584 CTGCGCCATCTGCATCACCTGCTCCTGGTATACCATGATGCCGTAGGT 1631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160383283031664