Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_028832.1 Length=61511 Score E Sequences producing significant alignments: (Bits) Value seq8239 82.4 3e-11 seq3805 82.4 3e-11 >seq8239 Length=1603 Score = 82.4 bits (90), Expect = 3e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 54623 ATGCCCGACGCACATTTCGGCAAAGGCAGCTCGGTCGGCACAGTCATCCCCACCCAAGGC 54682 ||||| |||| || | ||||| ||| | || ||| | || ||||| |||| || Sbjct 1492 ATGCCGGACGTGCACCTGGGCAAGGGCGCGACCGTGGGCTCGGTGATCCCGACCCGCGGT 1551 Query 54683 GCCGTCATCCCGGCCGCCGTCGGCGTCGACATCGGCTGCGGCATG 54727 || |||||||||| || ||||||||||||||||||||||||||| Sbjct 1552 GCGATCATCCCGGCGGCGGTCGGCGTCGACATCGGCTGCGGCATG 1596 >seq3805 Length=3888 Score = 82.4 bits (90), Expect = 3e-11 Identities = 68/82 (83%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 784 CACATATGCGGGTAGCTCAATTCGGTAGAGCAGCGGTCTCCAAAACCGCCGGTTGCAGGT 843 ||| || || ||||||||||| || ||||||||||||||||||||||| ||||| ||| Sbjct 2172 CACGTACGCCAGTAGCTCAATT-GGCAGAGCAGCGGTCTCCAAAACCGCAGGTTGGGGGT 2230 Query 844 TCGAGTCCTGCCCCGTGTGCCA 865 |||||||| || | |||||| Sbjct 2231 TCGAGTCCCTCCTGGCGTGCCA 2252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 196685250619536