Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_028876.1 Length=109800 Score E Sequences producing significant alignments: (Bits) Value seq8096 113 3e-20 >seq8096 Length=1015 Score = 113 bits (124), Expect = 3e-20 Identities = 138/186 (74%), Gaps = 3/186 (2%) Strand=Plus/Plus Query 96676 CGGCACGTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAG 96735 ||| | ||||| ||||| ||||| |||| || || ||| ||| |||||||||||||| Sbjct 112 CGGGATGTTGGCCTTGATCAGGCCGGTGATGACGTCGACGCTGGGACGCTGCGTCGCCAG 171 Query 96736 GACGAGATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGAC 96795 || || || || ||||| |||||||||||||| || | |||| | ||| | |||| Sbjct 172 GATCAGGTGGATGCCGGCCGCGCGCGCCTTCTGCGCCAGGCGGGCGATGAGTTCTTCGA- 230 Query 96796 TTCTTTCTTGTAGCCGCCCATCATGAGGTCTGCGAGTTCGTCGACCACTACCACGATGTA 96855 || |||||| | ||||||| ||||| || || ||||||| || ||||||||| Sbjct 231 -TC-TTCTTGCCCACCACCATCATCAGGTCGGCCAGCTCGTCGATGACCACCACGATGGT 288 Query 96856 GGGGAG 96861 ||| || Sbjct 289 GGGTAG 294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351183249679656