Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22]
12,136 sequences; 257,976,923 total letters
Query= NC_028892.1
Length=49949
Score E
Sequences producing significant alignments: (Bits) Value
seq3733 143 9e-30
>seq3733
Length=4163
Score = 143 bits (158), Expect = 9e-30
Identities = 210/295 (71%), Gaps = 4/295 (1%)
Strand=Plus/Plus
Query 39031 CCGTACTTCTCGGTGACGTACCGGATCACGTCGCCACGGCGACGGTCATC--GAAGTCGA 39088
|||||||| | |||||| |||||| ||| | ||||| | ||| ||||||||
Sbjct 2462 CCGTACTTGCGTGCGACGTAGTCGATCACTTCGTCGCGGCG--GTCCATGCAGAAGTCGA 2519
Query 39089 TGTCCACGTCGGGCATGGAGACACGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGT 39148
|||| | ||||||||| || || || || || || ||||| |||||||| | || ||
Sbjct 2520 TGTCGAAGTCGGGCATCGACACGCGTTCCGGATTGAGGAAGCGCTCGAACAGCAGGTTGT 2579
Query 39149 GAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAG 39208
|| | |||||||||||||||||| || || |||| ||||||| || || | |
Sbjct 2580 ACGGCAGCGGGTCCAGGTCGGTGATCTTCAGCGCCCACGCCACCAGCGAACCGGCACCCG 2639
Query 39209 AGCCGCGCCCAGGGCCGACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGA 39268
| || || || || |||| | | ||| | | ||| |||| |||||||||||| |
Sbjct 2640 AACCACGGCCGGGACCGATCGGGATGCCCTGGTTCTTGCCCCACTGGATGAAGTCGGCCA 2699
Query 39269 CGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATCATGTCGATCTCGTACTC 39323
||| |||||||| |||||| ||||||| | |||| ||| || |||| ||||
Sbjct 2700 CGATCAGGAAGTAGCCCGGGAAGCCCATCTTGATGATGGTGTTGAGCTCGAACTC 2754
Score = 116 bits (128), Expect = 1e-21
Identities = 229/334 (69%), Gaps = 6/334 (2%)
Strand=Plus/Plus
Query 37916 CCGAGGTGAGCACGGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGC 37975
|||||| ||| ||| |||||| |||||||||| ||||| |||||| | || ||
Sbjct 1301 CCGAGGACAGCGTGGCTGCCATGAACTCGGCCGGATAGTGGCGCTTCAGCCAGGCGGTCT 1360
Query 37976 GGTAGGCGATGAGTCCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAGG 38035
||||| || ||| |||| || || | ||||| ||||||||| |||| ||||||||
Sbjct 1361 GGTAGCTGACCAGTGCGTATGCAGCGGCGTGCGACTTGTTGAAACCGTAGCCGGCGAACT 1420
Query 38036 GTACGAGCACGTCCCACACCGCC-CGGA--TGGCAGCCTCCGAGTAGCCTCGCTCGCTCG 38092
| | || ||| | | || ||| |||| | ||| | | || | ||| |
Sbjct 1421 TCTCCATCAGGTCGAAGATGGCATCGGCCTTGGCCTCGTCCACGCCG--TCCTTGGCT-G 1477
Query 38093 CCCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGG 38152
| || | ||||| || || | |||||||| | | ||| |||||||||||| |
Sbjct 1478 CGCCTTCGCGGAAGATCTCGCGGTGCTTGGCCATTTCGGCAGGCACCTTCTTGCCCATCG 1537
Query 38153 CGCGACGGAGGAGGTCGGCCTGACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCT 38212
|||| || || |||||||| || || | ||| ||| | | |||||||||| || |
Sbjct 1538 CGCGGCGCAGCAGGTCGGCGCCGCCCAGCGAGTAGCCGCCGACGATCTGCGCCATCTGCA 1597
Query 38213 GCACCTGCTCCTGGTAGATGATGAGCCCGAAGGT 38246
||||||||||||||| | |||| ||| ||||
Sbjct 1598 TCACCTGCTCCTGGTATACCATGATGCCGTAGGT 1631
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 159692182643952
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |