Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_028892.1 Length=49949 Score E Sequences producing significant alignments: (Bits) Value seq3733 143 9e-30 >seq3733 Length=4163 Score = 143 bits (158), Expect = 9e-30 Identities = 210/295 (71%), Gaps = 4/295 (1%) Strand=Plus/Plus Query 39031 CCGTACTTCTCGGTGACGTACCGGATCACGTCGCCACGGCGACGGTCATC--GAAGTCGA 39088 |||||||| | |||||| |||||| ||| | ||||| | ||| |||||||| Sbjct 2462 CCGTACTTGCGTGCGACGTAGTCGATCACTTCGTCGCGGCG--GTCCATGCAGAAGTCGA 2519 Query 39089 TGTCCACGTCGGGCATGGAGACACGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGT 39148 |||| | ||||||||| || || || || || || ||||| |||||||| | || || Sbjct 2520 TGTCGAAGTCGGGCATCGACACGCGTTCCGGATTGAGGAAGCGCTCGAACAGCAGGTTGT 2579 Query 39149 GAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAG 39208 || | |||||||||||||||||| || || |||| ||||||| || || | | Sbjct 2580 ACGGCAGCGGGTCCAGGTCGGTGATCTTCAGCGCCCACGCCACCAGCGAACCGGCACCCG 2639 Query 39209 AGCCGCGCCCAGGGCCGACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGA 39268 | || || || || |||| | | ||| | | ||| |||| |||||||||||| | Sbjct 2640 AACCACGGCCGGGACCGATCGGGATGCCCTGGTTCTTGCCCCACTGGATGAAGTCGGCCA 2699 Query 39269 CGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATCATGTCGATCTCGTACTC 39323 ||| |||||||| |||||| ||||||| | |||| ||| || |||| |||| Sbjct 2700 CGATCAGGAAGTAGCCCGGGAAGCCCATCTTGATGATGGTGTTGAGCTCGAACTC 2754 Score = 116 bits (128), Expect = 1e-21 Identities = 229/334 (69%), Gaps = 6/334 (2%) Strand=Plus/Plus Query 37916 CCGAGGTGAGCACGGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGC 37975 |||||| ||| ||| |||||| |||||||||| ||||| |||||| | || || Sbjct 1301 CCGAGGACAGCGTGGCTGCCATGAACTCGGCCGGATAGTGGCGCTTCAGCCAGGCGGTCT 1360 Query 37976 GGTAGGCGATGAGTCCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAGG 38035 ||||| || ||| |||| || || | ||||| ||||||||| |||| |||||||| Sbjct 1361 GGTAGCTGACCAGTGCGTATGCAGCGGCGTGCGACTTGTTGAAACCGTAGCCGGCGAACT 1420 Query 38036 GTACGAGCACGTCCCACACCGCC-CGGA--TGGCAGCCTCCGAGTAGCCTCGCTCGCTCG 38092 | | || ||| | | || ||| |||| | ||| | | || | ||| | Sbjct 1421 TCTCCATCAGGTCGAAGATGGCATCGGCCTTGGCCTCGTCCACGCCG--TCCTTGGCT-G 1477 Query 38093 CCCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGG 38152 | || | ||||| || || | |||||||| | | ||| |||||||||||| | Sbjct 1478 CGCCTTCGCGGAAGATCTCGCGGTGCTTGGCCATTTCGGCAGGCACCTTCTTGCCCATCG 1537 Query 38153 CGCGACGGAGGAGGTCGGCCTGACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCT 38212 |||| || || |||||||| || || | ||| ||| | | |||||||||| || | Sbjct 1538 CGCGGCGCAGCAGGTCGGCGCCGCCCAGCGAGTAGCCGCCGACGATCTGCGCCATCTGCA 1597 Query 38213 GCACCTGCTCCTGGTAGATGATGAGCCCGAAGGT 38246 ||||||||||||||| | |||| ||| |||| Sbjct 1598 TCACCTGCTCCTGGTATACCATGATGCCGTAGGT 1631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159692182643952