Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_028976.1 Length=50113 Score E Sequences producing significant alignments: (Bits) Value seq3733 154 5e-33 >seq3733 Length=4163 Score = 154 bits (170), Expect = 5e-33 Identities = 260/373 (70%), Gaps = 10/373 (3%) Strand=Plus/Plus Query 39384 CCAGCACGCGGGCCGCGTC---CTTCATCGCGTTGCGGGCCTTGATCCTGCCGTACGTCG 39440 ||||||||||| | | ||| | || ||| ||| |||| || | |||||| || Sbjct 2382 CCAGCACGCGGCCGGAGTCGCGCACCACCGCCTTGGCGGCCATGGT---GCCGTAGGTGA 2438 Query 39441 CGATCTGTGCGACCTTGTCGCTGCCGTACTTCTCGGTGACGTACCGGATCACGTCGCCAC 39500 |||||| ||| |||| |||||||| | |||||| |||||| ||| | | Sbjct 2439 TGATCTGGCTGACGCGCTCGCGCCCGTACTTGCGTGCGACGTAGTCGATCACTTCGTCGC 2498 Query 39501 GGCGACGGTCATC--GAAGTCGATGTCCACGTCGGGCATGGAGACGCGCTCAGGGTTCAG 39558 |||| | ||| |||||||||||| | ||||||||| || ||||| || || || || Sbjct 2499 GGCG--GTCCATGCAGAAGTCGATGTCGAAGTCGGGCATCGACACGCGTTCCGGATTGAG 2556 Query 39559 GAACCGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTA 39618 ||| |||||||| | || || || | |||||||||||||||||| || || | Sbjct 2557 GAAGCGCTCGAACAGCAGGTTGTACGGCAGCGGGTCCAGGTCGGTGATCTTCAGCGCCCA 2616 Query 39619 CGCGGCCAGCGAGCCAGCCGCAGAGCCACGCCCAGGGCCGACCCACACACCGTTCTCCTT 39678 ||| ||||||| || || | || ||||| || || |||| | | || | | ||| Sbjct 2617 CGCCACCAGCGAACCGGCACCCGAACCACGGCCGGGACCGATCGGGATGCCCTGGTTCTT 2676 Query 39679 CGCCCAGCCGATGAAGTCGGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGAT 39738 |||| |||||||||||| |||| |||||||| |||||| ||||||| | |||| Sbjct 2677 GCCCCACTGGATGAAGTCGGCCACGATCAGGAAGTAGCCCGGGAAGCCCATCTTGATGAT 2736 Query 39739 CATGTCGATCTCG 39751 ||| || |||| Sbjct 2737 GGTGTTGAGCTCG 2749 Score = 122 bits (134), Expect = 3e-23 Identities = 229/334 (69%), Gaps = 6/334 (2%) Strand=Plus/Plus Query 38349 CCGAGGTGAGCACGGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGC 38408 |||||| ||| ||| |||||| |||||||||| ||||| |||||| | || || Sbjct 1301 CCGAGGACAGCGTGGCTGCCATGAACTCGGCCGGATAGTGGCGCTTCAGCCAGGCGGTCT 1360 Query 38409 GGTAGGCGATGAGTCCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAGG 38468 ||||| || ||| |||| || || | ||||| ||||||||| |||| |||||||| Sbjct 1361 GGTAGCTGACCAGTGCGTATGCAGCGGCGTGCGACTTGTTGAAACCGTAGCCGGCGAACT 1420 Query 38469 GTACGAGCACGTCCCACACCGCC-CGGA--TGGCAGCGTCCGAGTAGCCTCGCTCGCTTG 38525 | | || ||| | | || ||| |||| ||||| | | | || | || Sbjct 1421 TCTCCATCAGGTCGAAGATGGCATCGGCCTTGGCCTCGTCCACGCCGTC---CTTGGCTG 1477 Query 38526 CTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGG 38585 | || | ||||| || || | |||||||| | | ||| |||||||||||| | Sbjct 1478 CGCCTTCGCGGAAGATCTCGCGGTGCTTGGCCATTTCGGCAGGCACCTTCTTGCCCATCG 1537 Query 38586 CGCGACGGAGAAGGTCGGCCTGACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCT 38645 |||| || || |||||||| || || | ||| ||| | | |||||||||| || | Sbjct 1538 CGCGGCGCAGCAGGTCGGCGCCGCCCAGCGAGTAGCCGCCGACGATCTGCGCCATCTGCA 1597 Query 38646 GCACCTGCTCCTGGTAGATGATGAGCCCGAAGGT 38679 ||||||||||||||| | |||| ||| |||| Sbjct 1598 TCACCTGCTCCTGGTATACCATGATGCCGTAGGT 1631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160216907012400