Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_028978.1 Length=60609 Score E Sequences producing significant alignments: (Bits) Value seq8239 89.7 2e-13 >seq8239 Length=1603 Score = 89.7 bits (98), Expect = 2e-13 Identities = 123/170 (72%), Gaps = 4/170 (2%) Strand=Plus/Plus Query 54896 CAGACGCTTGCGCAG--GCGCAGCAGATCGCCGATCTGCCTTTCGTCTATCCGCATGTGG 54953 ||| ||| || |||| ||||| || |||||| | || |||||| ||| |||| Sbjct 1429 CAGGCGCATGAGCAGCTGCGCAACA--TCGCCGCGATCCCGTTCGTCGGGCCGTGGGTGG 1486 Query 54954 CGCTGATGCCCGATGCGCATTTCGGCAAGGGCAGCAGTGTCGGCACGGTGATCCCGACCG 55013 | ||||||| || | ||| | ||||||||| | || ||| |||||||||||||| Sbjct 1487 CCGTGATGCCGGACGTGCACCTGGGCAAGGGCGCGACCGTGGGCTCGGTGATCCCGACCC 1546 Query 55014 AGGGCGCCGTCATTCCCGCCGCGGTGGGTGTCGATATTGGCTGCGGCATG 55063 || || |||| || || ||||| || ||||| || |||||||||||| Sbjct 1547 GCGGTGCGATCATCCCGGCGGCGGTCGGCGTCGACATCGGCTGCGGCATG 1596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 193799266593072