Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq2842 114 1e-20 seq10593 93.3 4e-14 >seq2842 Length=3006 Score = 114 bits (126), Expect = 1e-20 Identities = 217/317 (68%), Gaps = 2/317 (1%) Strand=Plus/Plus Query 34484 GACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTG 34543 |||||| |||||| || | ||| | ||||| ||||| ||| | || | ||| Sbjct 1621 GACCAGATGCAGTGGCTGGTGGACGAGATCAAGCGCAACCCCGATTCGCGCCGGCTGGTG 1680 Query 34544 ATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTC 34603 | |||| |||||| | || || | | ||||||||| |||||||||| ||| Sbjct 1681 GTCAGCGCCTGGAACGTGGGCGAGCTTTCGCAGATGGCGCTGATGCCGTGCCACAACCTG 1740 Query 34604 TGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGAC 34663 | ||| |||||||| | | | || |||| ||||||||| || || || || ||| Sbjct 1741 TTCCAGTTCTACGTGGTGGACGGCAAGCTCAGCTGCCAGCTGTACCAGCGCAGCGGTGAC 1800 Query 34664 ATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCT 34723 || | || |||||||||||||| || || ||||| ||||| || ||||| | || Sbjct 1801 ATCTTCCTCGGTGTGCCGTTCAACATCGCCAGCTACGCGCTGCTGACCCACATGGTGGCG 1860 Query 34724 CATGTCGTGGGGTTGGTTCCTGGG-GAGCTGGTGCATACGTTGGGGGATGCGCATATCTA 34782 || | | || ||| | |||| || | ||||||||| |||| || ||||| | || Sbjct 1861 CAGGCCACCGGCCTGG-GCGTGGGCGACTTCGTGCATACGCTGGGTGACGCGCACCTGTA 1919 Query 34783 CCTGAACCACATCGAGC 34799 | ||||||| |||||| Sbjct 1920 CTCGAACCACTTCGAGC 1936 Score = 114 bits (126), Expect = 1e-20 Identities = 217/317 (68%), Gaps = 2/317 (1%) Strand=Plus/Minus Query 6546 GCTCGATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTC-CCCAGGA 6604 |||||| ||||||| ||| | ||||| || |||| ||||||||| | || |||| | Sbjct 1936 GCTCGAAGTGGTTCGAGTACAGGTGCGCGTCACCCAGCGTATGCACGAAGTCGCCCACGC 1877 Query 6605 ACCAACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAAC 6664 ||| || | | || || | ||||| || ||||| ||||| || || ||||||||| Sbjct 1876 -CCAGGCCGGTGGCCTGCGCCACCATGTGGGTCAGCAGCGCGTAGCTGGCGATGTTGAAC 1818 Query 6665 GGCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTC 6724 ||||| || | ||||| || || || || ||||||||| |||| || | | Sbjct 1817 GGCACACCGAGGAAGATGTCACCGCTGCGCTGGTACAGCTGGCAGCTGAGCTTGCCGTCC 1758 Query 6725 GCGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTC 6784 | |||||||| ||| | ||| |||||||||| ||||||||| | | || || | Sbjct 1757 ACCACGTAGAACTGGAACAGGTTGTGGCACGGCATCAGCGCCATCTGCGAAAGCTCGCCC 1698 Query 6785 GGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATC 6844 |||||| |||| | ||| | || | ||| ||||| ||||| | ||| | | Sbjct 1697 ACGTTCCAGGCGCTGACCACCAGCCGGCGCGAATCGGGGTTGCGCTTGATCTCGTCCACC 1638 Query 6845 ACGTACTGCAGCTGGTC 6861 | |||||| |||||| Sbjct 1637 AGCCACTGCATCTGGTC 1621 >seq10593 Length=94130 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 6617 ACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAAC 6676 ||||||||||||||||| || ||||||| || || ||||| |||||||| || || Sbjct 1827 ACATGAGCGATCATGTAAGTCAGCAGAGAATACGACGCTATGTTAAACGGCACTCCCAAA 1886 Query 6677 CCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAAT 6736 |||||||| | || |||||||| || ||||| ||||| || ||||| ||| Sbjct 1887 CCCATGTCCGCGCTTCTCTGATAGAGTTGCGTGGACAATTCCCCGTTGTTCACGTAAAAT 1946 Query 6737 TGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCG 6796 || || | ||||| || || | |||||| || | ||| ||| ||||| || Sbjct 1947 TGTACGAAAGCATGGCATGGTGGTAATGCCATCTTTGGAATATCAACCGGATTCCAGGCT 2006 Query 6797 CACATCACGATCCTTCTGTCATCAGG 6822 |||| | ||| | |||||| || || Sbjct 2007 GACATTATGATACGTCTGTCCTCCGG 2032 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 34523 CCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCG 34582 || || |||||| | ||| | |||| || ||||| ||| ||| | || |||||| Sbjct 2032 CCGGAGGACAGACGTATCATAATGTCAGCCTGGAATCCGGTTGATATTCCAAAGATGGCA 1973 Query 34583 CTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAG 34642 | || || ||||| | || ||||| ||||| || ||||| ||||| || Sbjct 1972 TTACCACCATGCCATGCTTTCGTACAATTTTACGTGAACAACGGGGAATTGTCCACGCAA 1913 Query 34643 CTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCT 34702 |||||||| || | |||||||| || || |||||||| ||||| || || || Sbjct 1912 CTCTATCAGAGAAGCGCGGACATGGGTTTGGGAGTGCCGTTTAACATAGCGTCGTATTCT 1853 Query 34703 CTGCTCACGTACATGATCGCTCATGT 34728 ||||| || ||||||||||||||||| Sbjct 1852 CTGCTGACTTACATGATCGCTCATGT 1827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448194398593920