Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22]
12,136 sequences; 257,976,923 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq2842 114 1e-20
seq10593 93.3 4e-14
>seq2842
Length=3006
Score = 114 bits (126), Expect = 1e-20
Identities = 217/317 (68%), Gaps = 2/317 (1%)
Strand=Plus/Plus
Query 34484 GACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTG 34543
|||||| |||||| || | ||| | ||||| ||||| ||| | || | |||
Sbjct 1621 GACCAGATGCAGTGGCTGGTGGACGAGATCAAGCGCAACCCCGATTCGCGCCGGCTGGTG 1680
Query 34544 ATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTC 34603
| |||| |||||| | || || | | ||||||||| |||||||||| |||
Sbjct 1681 GTCAGCGCCTGGAACGTGGGCGAGCTTTCGCAGATGGCGCTGATGCCGTGCCACAACCTG 1740
Query 34604 TGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGAC 34663
| ||| |||||||| | | | || |||| ||||||||| || || || || |||
Sbjct 1741 TTCCAGTTCTACGTGGTGGACGGCAAGCTCAGCTGCCAGCTGTACCAGCGCAGCGGTGAC 1800
Query 34664 ATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCT 34723
|| | || |||||||||||||| || || ||||| ||||| || ||||| | ||
Sbjct 1801 ATCTTCCTCGGTGTGCCGTTCAACATCGCCAGCTACGCGCTGCTGACCCACATGGTGGCG 1860
Query 34724 CATGTCGTGGGGTTGGTTCCTGGG-GAGCTGGTGCATACGTTGGGGGATGCGCATATCTA 34782
|| | | || ||| | |||| || | ||||||||| |||| || ||||| | ||
Sbjct 1861 CAGGCCACCGGCCTGG-GCGTGGGCGACTTCGTGCATACGCTGGGTGACGCGCACCTGTA 1919
Query 34783 CCTGAACCACATCGAGC 34799
| ||||||| ||||||
Sbjct 1920 CTCGAACCACTTCGAGC 1936
Score = 114 bits (126), Expect = 1e-20
Identities = 217/317 (68%), Gaps = 2/317 (1%)
Strand=Plus/Minus
Query 6546 GCTCGATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTC-CCCAGGA 6604
|||||| ||||||| ||| | ||||| || |||| ||||||||| | || |||| |
Sbjct 1936 GCTCGAAGTGGTTCGAGTACAGGTGCGCGTCACCCAGCGTATGCACGAAGTCGCCCACGC 1877
Query 6605 ACCAACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAAC 6664
||| || | | || || | ||||| || ||||| ||||| || || |||||||||
Sbjct 1876 -CCAGGCCGGTGGCCTGCGCCACCATGTGGGTCAGCAGCGCGTAGCTGGCGATGTTGAAC 1818
Query 6665 GGCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTC 6724
||||| || | ||||| || || || || ||||||||| |||| || | |
Sbjct 1817 GGCACACCGAGGAAGATGTCACCGCTGCGCTGGTACAGCTGGCAGCTGAGCTTGCCGTCC 1758
Query 6725 GCGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTC 6784
| |||||||| ||| | ||| |||||||||| ||||||||| | | || || |
Sbjct 1757 ACCACGTAGAACTGGAACAGGTTGTGGCACGGCATCAGCGCCATCTGCGAAAGCTCGCCC 1698
Query 6785 GGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATC 6844
|||||| |||| | ||| | || | ||| ||||| ||||| | ||| | |
Sbjct 1697 ACGTTCCAGGCGCTGACCACCAGCCGGCGCGAATCGGGGTTGCGCTTGATCTCGTCCACC 1638
Query 6845 ACGTACTGCAGCTGGTC 6861
| |||||| ||||||
Sbjct 1637 AGCCACTGCATCTGGTC 1621
>seq10593
Length=94130
Score = 93.3 bits (102), Expect = 4e-14
Identities = 144/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 6617 ACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAAC 6676
||||||||||||||||| || ||||||| || || ||||| |||||||| || ||
Sbjct 1827 ACATGAGCGATCATGTAAGTCAGCAGAGAATACGACGCTATGTTAAACGGCACTCCCAAA 1886
Query 6677 CCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAAT 6736
|||||||| | || |||||||| || ||||| ||||| || ||||| |||
Sbjct 1887 CCCATGTCCGCGCTTCTCTGATAGAGTTGCGTGGACAATTCCCCGTTGTTCACGTAAAAT 1946
Query 6737 TGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCG 6796
|| || | ||||| || || | |||||| || | ||| ||| ||||| ||
Sbjct 1947 TGTACGAAAGCATGGCATGGTGGTAATGCCATCTTTGGAATATCAACCGGATTCCAGGCT 2006
Query 6797 CACATCACGATCCTTCTGTCATCAGG 6822
|||| | ||| | |||||| || ||
Sbjct 2007 GACATTATGATACGTCTGTCCTCCGG 2032
Score = 93.3 bits (102), Expect = 4e-14
Identities = 144/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 34523 CCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCG 34582
|| || |||||| | ||| | |||| || ||||| ||| ||| | || ||||||
Sbjct 2032 CCGGAGGACAGACGTATCATAATGTCAGCCTGGAATCCGGTTGATATTCCAAAGATGGCA 1973
Query 34583 CTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAG 34642
| || || ||||| | || ||||| ||||| || ||||| ||||| ||
Sbjct 1972 TTACCACCATGCCATGCTTTCGTACAATTTTACGTGAACAACGGGGAATTGTCCACGCAA 1913
Query 34643 CTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCT 34702
|||||||| || | |||||||| || || |||||||| ||||| || || ||
Sbjct 1912 CTCTATCAGAGAAGCGCGGACATGGGTTTGGGAGTGCCGTTTAACATAGCGTCGTATTCT 1853
Query 34703 CTGCTCACGTACATGATCGCTCATGT 34728
||||| || |||||||||||||||||
Sbjct 1852 CTGCTGACTTACATGATCGCTCATGT 1827
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448194398593920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |