Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22]
12,136 sequences; 257,976,923 total letters
Query= NC_029304.1
Length=111246
Score E
Sequences producing significant alignments: (Bits) Value
seq7200 111 1e-19
seq9711 109 4e-19
>seq7200
Length=105881
Score = 111 bits (122), Expect = 1e-19
Identities = 165/231 (71%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848
|||||| |||||||| |||||||| || || ||| || ||| | || ||||| ||
Sbjct 105140 AATGCAGATTTTTGTCAAAACTCTCACAGGAAAAACCATCACATTGGAAGTCGAG-GCTT 105198
Query 27849 CG---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGA 27905
|| ||||| | || |||||| |||||| || || ||||| |||| |||
Sbjct 105199 CGGACACGATCGAAAAC--GTCAAAGCAAAAATTCAAGATAAGGAAGGAATTCCTCCGGA 105256
Query 27906 GCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTA 27965
|||||| | || || ||||| || |||||| | || |||| |||| | || |||||
Sbjct 105257 TCAGCAAAGATTGATCTTTGCTGGCAAACAACTTGAGGACGGTCGCACACTTTCTGATTA 105316
Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|||||| |||||||| || |||||||| ||| | || |||||||| ||
Sbjct 105317 CAACATTCAAAAAGAATCAACGTTGCATTTAGTTCTCCGATTGCGTGGTGG 105367
Score = 91.5 bits (100), Expect = 1e-13
Identities = 160/230 (70%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||||||||| || ||||| | ||||| || |||||| | || || || ||| |
Sbjct 105597 ATGCAAATTTTCGTTAAAACATTGACTGGAAAGACCATTACATTGGAAGTTGAG-GCATC 105655
Query 27850 G---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906
| ||||| | ||| |||||| ||||| || || ||||| | || ||
Sbjct 105656 GGACACGATCGAAAAT--GTCAAAGCCAAAATTCAGGATAAGGAAGGAATCCCTCCAGAT 105713
Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966
|| || ||||||| |||||||||||||| |||| || | || | | || || |||
Sbjct 105714 CAACAGAGGTTAATCTTTGCCGGAAAACAGCTGGAAGATGGTCGTACACTTTCTGACTAC 105773
Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|| || || ||||| || |||||||||||| | ||||||||||| ||
Sbjct 105774 AATATTCAGAAAGAATCAACCTTGCATTTGGTTCTCCGTTTGCGTGGTGG 105823
Score = 87.8 bits (96), Expect = 1e-12
Identities = 160/230 (70%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
|||||||||||||| ||||| | || || || || ||| | || || ||| |
Sbjct 105369 ATGCAAATTTTTGTTAAAACATTGACGGGAAAGACCATCACATTGGAGGTTGAAGCGTCA 105428
Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
||| ||| | || |||||| ||||| || || ||||| | || ||| |
Sbjct 105429 GACACGATCGAGAAC--GTCAAAGCCAAAATTCAGGATAAGGAAGGAATCCCACCGGATC 105486
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTAC 27966
|||| |||| || || |||||||| || | || |||| |||| |||| || |||||
Sbjct 105487 AGCAGAGGTTGATCTTCGCCGGAAAGCAGCTAGAGGACGGCCGCACGCTT-TCAGATTAT 105545
Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
||||| |||||||| || |||||||| ||| | ||||||||||| ||
Sbjct 105546 AACATTCAAAAAGAATCAACGTTGCATTTAGTTCTCCGTTTGCGTGGTGG 105595
Score = 84.2 bits (92), Expect = 2e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942
||||||||||| | || || ||||| || || || ||||| |||||||| | ||
Sbjct 104778 GACAAAGAAGGCATCCCACCTGACCAGCAGCGTTTGATCTTTGCTGGAAAACAGCTTGAA 104837
Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002
|||| ||| | |||||| || ||||| |||||||| || ||| | || |||||| |
Sbjct 104838 GACGGACGTACCTTGTCTGACTACAATATCCAAAAGGAATCGACTCTTCACTTGGTTCTT 104897
Query 28003 CGTTTGCGTGGCGG 28016
|| || ||||||||
Sbjct 104898 CGATTACGTGGCGG 104911
>seq9711
Length=151070
Score = 109 bits (120), Expect = 4e-19
Identities = 164/230 (71%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| |||||||| |||||||| ||||| ||| |||||| | || || ||| || |
Sbjct 103792 ATGCAGATTTTTGTTAAAACTCTCACTGGCAAAACCATTACATTGGAGGTTGAA-GCTTC 103850
Query 27850 G---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906
| || || | ||| |||||| ||||| || || ||||| | || |||
Sbjct 103851 GGACACAATTGAAAAT--GTCAAAGCCAAAATTCAAGATAAGGAAGGAATCCCTCCGGAT 103908
Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966
||||| | ||||| || || ||||||||| |||| || | || | | ||||| |||
Sbjct 103909 CAGCAGAGATTAATCTTCGCTGGAAAACAACTGGAAGATGGCCGTACACTTTCCGACTAC 103968
Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
||||| || ||||| || |||||||||||| | ||||||||||| ||
Sbjct 103969 AACATTCAGAAAGAATCGACCTTGCATTTGGTTCTCCGTTTGCGTGGTGG 104018
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355809765282072
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |