Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq7200 111 1e-19 seq9711 109 4e-19 >seq7200 Length=105881 Score = 111 bits (122), Expect = 1e-19 Identities = 165/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| |||||||| |||||||| || || ||| || ||| | || ||||| || Sbjct 105140 AATGCAGATTTTTGTCAAAACTCTCACAGGAAAAACCATCACATTGGAAGTCGAG-GCTT 105198 Query 27849 CG---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGA 27905 || ||||| | || |||||| |||||| || || ||||| |||| ||| Sbjct 105199 CGGACACGATCGAAAAC--GTCAAAGCAAAAATTCAAGATAAGGAAGGAATTCCTCCGGA 105256 Query 27906 GCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTA 27965 |||||| | || || ||||| || |||||| | || |||| |||| | || ||||| Sbjct 105257 TCAGCAAAGATTGATCTTTGCTGGCAAACAACTTGAGGACGGTCGCACACTTTCTGATTA 105316 Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||| |||||||| || |||||||| ||| | || |||||||| || Sbjct 105317 CAACATTCAAAAAGAATCAACGTTGCATTTAGTTCTCCGATTGCGTGGTGG 105367 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| || ||||| | ||||| || |||||| | || || || ||| | Sbjct 105597 ATGCAAATTTTCGTTAAAACATTGACTGGAAAGACCATTACATTGGAAGTTGAG-GCATC 105655 Query 27850 G---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | ||||| | ||| |||||| ||||| || || ||||| | || || Sbjct 105656 GGACACGATCGAAAAT--GTCAAAGCCAAAATTCAGGATAAGGAAGGAATCCCTCCAGAT 105713 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || || ||||||| |||||||||||||| |||| || | || | | || || ||| Sbjct 105714 CAACAGAGGTTAATCTTTGCCGGAAAACAGCTGGAAGATGGTCGTACACTTTCTGACTAC 105773 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || || || ||||| || |||||||||||| | ||||||||||| || Sbjct 105774 AATATTCAGAAAGAATCAACCTTGCATTTGGTTCTCCGTTTGCGTGGTGG 105823 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| ||||| | || || || || ||| | || || ||| | Sbjct 105369 ATGCAAATTTTTGTTAAAACATTGACGGGAAAGACCATCACATTGGAGGTTGAAGCGTCA 105428 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| | || |||||| ||||| || || ||||| | || ||| | Sbjct 105429 GACACGATCGAGAAC--GTCAAAGCCAAAATTCAGGATAAGGAAGGAATCCCACCGGATC 105486 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTAC 27966 |||| |||| || || |||||||| || | || |||| |||| |||| || ||||| Sbjct 105487 AGCAGAGGTTGATCTTCGCCGGAAAGCAGCTAGAGGACGGCCGCACGCTT-TCAGATTAT 105545 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| |||||||| || |||||||| ||| | ||||||||||| || Sbjct 105546 AACATTCAAAAAGAATCAACGTTGCATTTAGTTCTCCGTTTGCGTGGTGG 105595 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||||||||| | || || ||||| || || || ||||| |||||||| | || Sbjct 104778 GACAAAGAAGGCATCCCACCTGACCAGCAGCGTTTGATCTTTGCTGGAAAACAGCTTGAA 104837 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| ||| | |||||| || ||||| |||||||| || ||| | || |||||| | Sbjct 104838 GACGGACGTACCTTGTCTGACTACAATATCCAAAAGGAATCGACTCTTCACTTGGTTCTT 104897 Query 28003 CGTTTGCGTGGCGG 28016 || || |||||||| Sbjct 104898 CGATTACGTGGCGG 104911 >seq9711 Length=151070 Score = 109 bits (120), Expect = 4e-19 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||| |||||||| ||||| ||| |||||| | || || ||| || | Sbjct 103792 ATGCAGATTTTTGTTAAAACTCTCACTGGCAAAACCATTACATTGGAGGTTGAA-GCTTC 103850 Query 27850 G---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || || | ||| |||||| ||||| || || ||||| | || ||| Sbjct 103851 GGACACAATTGAAAAT--GTCAAAGCCAAAATTCAAGATAAGGAAGGAATCCCTCCGGAT 103908 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| | ||||| || || ||||||||| |||| || | || | | ||||| ||| Sbjct 103909 CAGCAGAGATTAATCTTCGCTGGAAAACAACTGGAAGATGGCCGTACACTTTCCGACTAC 103968 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| || ||||| || |||||||||||| | ||||||||||| || Sbjct 103969 AACATTCAGAAAGAATCGACCTTGCATTTGGTTCTCCGTTTGCGTGGTGG 104018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355809765282072