Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22]
12,136 sequences; 257,976,923 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq7200 93.3 4e-14
seq6771 89.7 4e-13
>seq7200
Length=105881
Score = 93.3 bits (102), Expect = 4e-14
Identities = 148/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135
|||||||| | || || ||||| ||||||||||| | || || || | || |||
Sbjct 105121 ACCAAATGCAAGGTTGATTCCTTTTGAATATTATAATCTGAGAGAGTACGACCATCCTCA 105062
Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCAT 39194
|| || || || ||||| || | | |||||| || |||||| | || ||||| ||
Sbjct 105061 AGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGTGGG-ATGCCTTCTTTATCTTG 105003
Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254
|||||| ||||| || | | |||||| | ||| || |||| ||||| | ||
Sbjct 105002 AATTTTCGCTTTGACATTCTCAATCGTATCAGAAGCCTCTACCTCCAAAGTGATGGTCTT 104943
Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
||| ||||| ||||||||||| || |||||
Sbjct 104942 TCCAGTCAGGGTTTTAACAAAAATCTGCAT 104913
Score = 89.7 bits (98), Expect = 4e-13
Identities = 170/247 (69%), Gaps = 4/247 (2%)
Strand=Plus/Minus
Query 39039 TAACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTT 39098
|||| ||||||| || || || | || || | || ||||| | ||| |||||
Sbjct 105612 TAACGAAAATTTG--CATACCACCACGCAAACGGAGAACTAAATGCAACGTTGATTCTTT 105555
Query 39099 TTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAG 39158
||| || |||||||| | ||| || || |||| || ||||| || || || || || |
Sbjct 105554 TTGAATGTTATAATCTGAAAGCGTGCGGCCGTCCTCTAGCTGCTTTCCGGCGAAGATCAA 105495
Query 39159 ACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCA 39217
| |||||| || |||||| || || || ||| ||||| ||||| || | |
Sbjct 105494 CCTCTGCTGATCCGGTGGGATTCCT-TCCTTATCCTGAATTTTGGCTTTGACGTTCTCGA 105436
Query 39218 CCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGA 39277
||| || || || || |||| ||||| | |||||||||| ||||||||||| |
Sbjct 105435 TCGTGTCTGACGCTTCAACCTCCAATGTGATGGTCTTTCCCGTCAATGTTTTAACAAAAA 105376
Query 39278 TTTGCAT 39284
|||||||
Sbjct 105375 TTTGCAT 105369
Score = 82.4 bits (90), Expect = 7e-11
Identities = 161/230 (70%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGG-C 39116
|| || | ||| || | ||||| || || || || ||||| ||||| || || | |
Sbjct 104911 CCGCCACGTAATCGAAGAACCAAGTGAAGAGTCGATTCCTTTTGGATATTGTAGTCAGAC 104852
Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGG 39175
||| || ||| |||| ||||||||||| || ||||| || | |||||||||||| |||||
Sbjct 104851 AAG-GTACGTCCGTCTTCAAGCTGTTTTCCAGCAAAGATCAAACGCTGCTGGTCAGGTGG 104793
Query 39176 GCACGCTCTCTTTGTCCATGATTTTCTG-TTTGAGCGTCGCCACCGTATCGCTCGACTCC 39234
| | || ||||||||| ||| | | || ||| | || | | || || | |||
Sbjct 104792 G-ATGCCTTCTTTGTCC-TGAATCTTTGCTTTCACGTTCTCGATAGTGTCAGAAGCCTCA 104735
Query 39235 ACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|| || | || || | ||||| |||| ||| || || || || |||||
Sbjct 104734 ACCTCAAGAGTTATGGTCTTTCCAGTCAACGTCTTCACGAAAATCTGCAT 104685
>seq6771
Length=7421
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135
|||| ||| ||||| || || || || ||||| |||| ||| |||| | || |||
Sbjct 303 ACCAGATGAAGCGTAGATTCCTTCTGGATGTTATAGTCGGAAAGAGTTCTGCCATCTTCA 244
Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195
|| |||||||| ||||| || ||||||||||| || | || | || |||||||| |
Sbjct 243 AGTTGTTTGCCAGCAAAAATTAGACGCTGCTGATCTGGAGGAATGCCTTCTTTGTCTTGG 184
Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255
|| || ||||| || | | || || | || || || | |||||| ||||
Sbjct 183 ATCTTAGCTTTGACATTCTCTATAGTGTCTGAAGCTTCAACTTCGAGGGTGATAGTTTTA 124
Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|| || || ||||| || ||||| |||||
Sbjct 123 CCAGTGAGAGTTTTTACGAAGATCTGCAT 95
Score = 87.8 bits (96), Expect = 2e-12
Identities = 134/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153
|| ||||| || || ||||| | ||| || | | || |||||||||||||| || ||
Sbjct 513 TCCTTTTGGATGTTGTAATCTGAAAGAGTCCTGCCATCTTCAAGCTGTTTGCCAGCGAAA 454
Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213
|| |||||||| || || | ||| | | |||||||||| |||||| ||| | ||
Sbjct 453 ATTAGACGCTGTTGATCCGGGGGAATTCCCTCTTTGTCCTGGATTTTAGCTTTCACGTTC 394
Query 39214 GCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACA 39273
| | ||||| | || || || | |||||| |||| || || || ||||| ||
Sbjct 393 TCTATAGTATCCGAAGCTTCAACTTCAAGGGTGATAGTTTTACCGGTGAGAGTTTTTACG 334
Query 39274 AAGATTTGCAT 39284
||||| |||||
Sbjct 333 AAGATCTGCAT 323
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429482066984168
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |