Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq7200 93.3 4e-14 seq6771 89.7 4e-13 >seq7200 Length=105881 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||||||| | || || ||||| ||||||||||| | || || || | || ||| Sbjct 105121 ACCAAATGCAAGGTTGATTCCTTTTGAATATTATAATCTGAGAGAGTACGACCATCCTCA 105062 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCAT 39194 || || || || ||||| || | | |||||| || |||||| | || ||||| || Sbjct 105061 AGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGTGGG-ATGCCTTCTTTATCTTG 105003 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 |||||| ||||| || | | |||||| | ||| || |||| ||||| | || Sbjct 105002 AATTTTCGCTTTGACATTCTCAATCGTATCAGAAGCCTCTACCTCCAAAGTGATGGTCTT 104943 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| ||||| ||||||||||| || ||||| Sbjct 104942 TCCAGTCAGGGTTTTAACAAAAATCTGCAT 104913 Score = 89.7 bits (98), Expect = 4e-13 Identities = 170/247 (69%), Gaps = 4/247 (2%) Strand=Plus/Minus Query 39039 TAACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTT 39098 |||| ||||||| || || || | || || | || ||||| | ||| ||||| Sbjct 105612 TAACGAAAATTTG--CATACCACCACGCAAACGGAGAACTAAATGCAACGTTGATTCTTT 105555 Query 39099 TTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAG 39158 ||| || |||||||| | ||| || || |||| || ||||| || || || || || | Sbjct 105554 TTGAATGTTATAATCTGAAAGCGTGCGGCCGTCCTCTAGCTGCTTTCCGGCGAAGATCAA 105495 Query 39159 ACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCA 39217 | |||||| || |||||| || || || ||| ||||| ||||| || | | Sbjct 105494 CCTCTGCTGATCCGGTGGGATTCCT-TCCTTATCCTGAATTTTGGCTTTGACGTTCTCGA 105436 Query 39218 CCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGA 39277 ||| || || || || |||| ||||| | |||||||||| ||||||||||| | Sbjct 105435 TCGTGTCTGACGCTTCAACCTCCAATGTGATGGTCTTTCCCGTCAATGTTTTAACAAAAA 105376 Query 39278 TTTGCAT 39284 ||||||| Sbjct 105375 TTTGCAT 105369 Score = 82.4 bits (90), Expect = 7e-11 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGG-C 39116 || || | ||| || | ||||| || || || || ||||| ||||| || || | | Sbjct 104911 CCGCCACGTAATCGAAGAACCAAGTGAAGAGTCGATTCCTTTTGGATATTGTAGTCAGAC 104852 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGG 39175 ||| || ||| |||| ||||||||||| || ||||| || | |||||||||||| ||||| Sbjct 104851 AAG-GTACGTCCGTCTTCAAGCTGTTTTCCAGCAAAGATCAAACGCTGCTGGTCAGGTGG 104793 Query 39176 GCACGCTCTCTTTGTCCATGATTTTCTG-TTTGAGCGTCGCCACCGTATCGCTCGACTCC 39234 | | || ||||||||| ||| | | || ||| | || | | || || | ||| Sbjct 104792 G-ATGCCTTCTTTGTCC-TGAATCTTTGCTTTCACGTTCTCGATAGTGTCAGAAGCCTCA 104735 Query 39235 ACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || | || || | ||||| |||| ||| || || || || ||||| Sbjct 104734 ACCTCAAGAGTTATGGTCTTTCCAGTCAACGTCTTCACGAAAATCTGCAT 104685 >seq6771 Length=7421 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||| ||| ||||| || || || || ||||| |||| ||| |||| | || ||| Sbjct 303 ACCAGATGAAGCGTAGATTCCTTCTGGATGTTATAGTCGGAAAGAGTTCTGCCATCTTCA 244 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 || |||||||| ||||| || ||||||||||| || | || | || |||||||| | Sbjct 243 AGTTGTTTGCCAGCAAAAATTAGACGCTGCTGATCTGGAGGAATGCCTTCTTTGTCTTGG 184 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 || || ||||| || | | || || | || || || | |||||| |||| Sbjct 183 ATCTTAGCTTTGACATTCTCTATAGTGTCTGAAGCTTCAACTTCGAGGGTGATAGTTTTA 124 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || || ||||| || ||||| ||||| Sbjct 123 CCAGTGAGAGTTTTTACGAAGATCTGCAT 95 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 || ||||| || || ||||| | ||| || | | || |||||||||||||| || || Sbjct 513 TCCTTTTGGATGTTGTAATCTGAAAGAGTCCTGCCATCTTCAAGCTGTTTGCCAGCGAAA 454 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 || |||||||| || || | ||| | | |||||||||| |||||| ||| | || Sbjct 453 ATTAGACGCTGTTGATCCGGGGGAATTCCCTCTTTGTCCTGGATTTTAGCTTTCACGTTC 394 Query 39214 GCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACA 39273 | | ||||| | || || || | |||||| |||| || || || ||||| || Sbjct 393 TCTATAGTATCCGAAGCTTCAACTTCAAGGGTGATAGTTTTACCGGTGAGAGTTTTTACG 334 Query 39274 AAGATTTGCAT 39284 ||||| ||||| Sbjct 333 AAGATCTGCAT 323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429482066984168