Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq7200 141 6e-29 seq6771 131 1e-25 seq9711 129 4e-25 seq10900 91.5 1e-13 >seq7200 Length=105881 Score = 141 bits (156), Expect = 6e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| || ||||| ||||| |||||||| ||||| | ||||| || | | Sbjct 105140 AATGCAGATTTTTGTCAAAACTCTCACAGGAAAAACCATCACATTGGAAGTCGAGGCTTC 105199 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | |||| | ||| ||||||| || || ||||| | || || ||||| Sbjct 105200 GGACACGATCGAAAACGTCAAAGCAAAAATTCAAGATAAGGAAGGAATTCCTCCGGATCA 105259 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | || || ||||| ||||||||||| || |||| ||||| | |||||||| Sbjct 105260 GCAAAGATTGATCTTTGCTGGCAAACAACTTGAGGACGGTCGCACACTTTCTGATTACAA 105319 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| |||||||| || || || ||||||||| | | ||||| || || Sbjct 105320 CATTCAAAAAGAATCAACGTTGCATTTAGTTCTCCGATTGCGTGGTGG 105367 Score = 123 bits (136), Expect = 2e-23 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||||||||| | || ||||| || || || | |||||||| | || Sbjct 105597 ATGCAAATTTTCGTTAAAACATTGACTGGAAAGACCATTACATTGGAAGTTGAGGCATCG 105656 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | ||| |||||| || || ||||| | || ||||||||| Sbjct 105657 GACACGATCGAAAATGTCAAAGCCAAAATTCAGGATAAGGAAGGAATCCCTCCAGATCAA 105716 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTACA 23788 ||| | ||||| |||||||| ||||| |||||||| | || |||||| || |||| Sbjct 105717 CAGAGGTTAATCTTTGCCGGAAAACAGCTGGAAGATGGTCGTACACTTT--CTGACTACA 105774 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 | || || ||||| || || || ||||| ||| | | ||||| || || Sbjct 105775 ATATTCAGAAAGAATCAACCTTGCATTTGGTTCTCCGTTTGCGTGGTGG 105823 Score = 114 bits (126), Expect = 9e-21 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| ||||||||||| || ||||| || |||||| | || || || | | Sbjct 104912 AATGCAGATTTTTGTTAAAACCCTGACTGGAAAGACCATCACTTTGGAGGTAGAGGCTTC 104971 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || || |||| ||| | ||| | |||||| || |||||||| | || ||||||| Sbjct 104972 TGATACGATTGAGAATGTCAAAGC-GAAAATTCAAGATAAAGAAGGCATCCCACCAGATC 105030 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | || || ||||| || || ||||| || || | || ||| | ||||| | Sbjct 105031 AGCAGAGATTGATCTTTGCTGGAAAGCAACTTGAGGATGGTCGTACTCTCTCAGATTATA 105090 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 | || ||||| || || || || ||||| ||| | | ||||| || ||| Sbjct 105091 ATATTCAAAAGGAATCAACCTTGCATTTGGTTCTTCGTTTGCGTGGTGGA 105140 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || | || ||||| || || ||||| || ||||| | | Sbjct 104685 ATGCAGATTTTCGTGAAGACGTTGACTGGAAAGACCATAACTCTTGAGGTTGAGGCTTCT 104744 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | || | | ||| ||| ||| ||||||||||| | || || || || Sbjct 104745 GACACTATCGAGAACGTGAAAGCAAAGATTCAGGACAAAGAAGGCATCCCACCTGACCAG 104804 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||||| || ||||| || ||||| || ||||||| ||| || || || ||||| Sbjct 104805 CAGCGTTTGATCTTTGCTGGAAAACAGCTTGAAGACGGACGTACCTTGTCTGACTACAAT 104864 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || ||||| || || || | || || ||| | | || || || ||| Sbjct 104865 ATCCAAAAGGAATCGACTCTTCACTTGGTTCTTCGATTACGTGGCGGA 104912 >seq6771 Length=7421 Score = 131 bits (144), Expect = 1e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| ||||| ||||| || ||||| ||||| || |||||||| | || Sbjct 323 ATGCAGATCTTCGTAAAAACTCTCACCGGTAAAACTATCACCCTTGAAGTTGAAGCTTCG 382 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| | || | | ||| ||||| |||||||| || | || || |||||| Sbjct 383 GATACTATAGAGAACGTGAAAGCTAAAATCCAGGACAAAGAGGGAATTCCCCCGGATCAA 442 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| |||| || || |||||||| || ||||| | | ||| | ||||||||| Sbjct 443 CAGCGTCTAATTTTCGCTGGCAAACAGCTTGAAGATGGCAGGACTCTTTCAGATTACAAC 502 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 || ||||| || || ||| | || |||||||| Sbjct 503 ATCCAAAAGGAATCAACACTCCACTTAGTTTT 534 Score = 125 bits (138), Expect = 5e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| ||||| ||||| || ||||| ||||| ||||||||||| | | Sbjct 95 ATGCAGATCTTCGTAAAAACTCTCACTGGTAAAACTATCACCCTCGAAGTTGAAGCTTCA 154 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | || ||| | ||| | || || ||||||||||| | || |||||||| Sbjct 155 GACACTATAGAGAATGTCAAAGC-TAAGATCCAAGACAAAGAAGGCATTCCTCCAGATCA 213 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| |||| ||||| ||||||||||| ||||| | | ||| | ||| || || Sbjct 214 GCAGCGTCTAATTTTTGCTGGCAAACAACTTGAAGATGGCAGAACTCTTTCCGACTATAA 273 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || || || || || | ||| | ||| Sbjct 274 CATCCAGAAGGAATCTACGCTTCATCTGGTT 304 >seq9711 Length=151070 Score = 129 bits (142), Expect = 4e-25 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| |||||||| ||||| || ||||| || || | || ||||| | || Sbjct 103792 ATGCAGATTTTTGTTAAAACTCTCACTGGCAAAACCATTACATTGGAGGTTGAAGCTTCG 103851 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | ||| |||||| || || ||||| | || || ||||| Sbjct 103852 GACACAATTGAAAATGTCAAAGCCAAAATTCAAGATAAGGAAGGAATCCCTCCGGATCAG 103911 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTACA 23788 ||| | ||||| || || || |||||||||||||| | || |||||| ||| |||| Sbjct 103912 CAGAGATTAATCTTCGCTGGAAAACAACTGGAAGATGGCCGTACACTTT--CCGACTACA 103969 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 |||| || ||||| || || || ||||| ||| | | ||||| || || Sbjct 103970 ACATTCAGAAAGAATCGACCTTGCATTTGGTTCTCCGTTTGCGTGGTGG 104018 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| |||||| | |||||||| || ||||| | || ||||| | | Sbjct 104020 ATGCAAATTTTCGTCAAAACCTTGACGGGAAAGACCATCACATTGGAGGTTGAAGCGTCA 104079 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | ||| |||||| || || ||||| | || || ||||| Sbjct 104080 GACACGATCGAGAACGTCAAAGCCAAAATTCAGGATAAGGAAGGAATCCCACCGGATCAG 104139 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || || ||||| || || || || |||| ||||| | ||||| ||| Sbjct 104140 CAGAGGTTGATCTTCGCCGGAAAGCAGCTAGAGGACGGCCGCACGCTTTCAGATTATAAC 104199 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || ||||| ||||| | ||||||||||| ||| | || ||||| Sbjct 104200 ATTCAGAAAGAATCCACTCTGCATTTAGTTTTGAGGCTTCGTGGAGG 104246 Score = 96.9 bits (106), Expect = 2e-15 Identities = 104/136 (76%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 || || ||||| | || |||||||||||| | ||||| |||||||| ||||| |||||| Sbjct 103657 GATAAGGAAGGAATCCCTCCAGATCAACAGAGGTTAATCTTTGCCGGAAAACAGCTGGAA 103716 Query 23764 GACGAACG--CACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTT 23821 || | || |||||| || |||||||| || |||||||| || |||||||| || | Sbjct 103717 GATGGTCGTACACTTT--CAGACTACAACATTCAGAAAGAGTCTACGTTACATTTGGTCT 103774 Query 23822 TAAGGTTGCGAGGAGG 23837 | ||| | || || || Sbjct 103775 TGAGGCTTCGTGGTGG 103790 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || | || || ||||| || || || || || || | || Sbjct 104248 ATGCAGATATTTGTCAAGACTTTAACTGGCAAAACTATAACACTAGAGGTCGAGGCTTCG 104307 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || |||||| |||||||| || | || || ||||| Sbjct 104308 GACACAATCGAGAACGTGAAGGCGAAAATTCAAGACAAAGAGGGCATTCCTCCCGATCAG 104367 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | | || || || ||||||||||| || |||| ||| ||||| ||| ||||| Sbjct 104368 CAAAGACTGATTTTCGCTGGCAAACAACTCGAGGACGGACGAACTTTGTCCGACTACAAT 104427 Query 23791 ATACAAAAAGAGTCCACA 23808 || |||||||| |||||| Sbjct 104428 ATTCAAAAAGAATCCACA 104445 >seq10900 Length=227893 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || || ||||| ||||| || || || | Sbjct 197415 ATGCAGATCTTCGTGAAGACCCTCACGGGTAAGACCATCACCCTCGAGGTGGAGGCCTCT 197356 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | || | | || || ||| || || ||||| | || || ||||| Sbjct 197355 GATACCATCGAGAACGTCAAGGCTAAGATTCAGGATAAGGAAGGAATTCCACCGGATCAG 197296 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || || || ||||||||||| || || | |||||| | ||||||||| Sbjct 197295 CAGAGACTCATCTTCGCTGGCAAACAACTAGAGGATGGACGCACCCTTTCAGATTACAAC 197236 Query 23791 ATACAAAAAG 23800 || ||||||| Sbjct 197235 ATTCAAAAAG 197226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337959605845088