Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22]
12,136 sequences; 257,976,923 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq9711 147 5e-30
seq6771 129 1e-24
seq10094 120 7e-22
seq7200 107 5e-18
seq10900 104 6e-17
seq2132 86.0 1e-11
>seq9711
Length=151070
Score = 147 bits (162), Expect = 5e-30
Identities = 155/204 (76%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554
||||| || ||||||||||| |||||||||||||| | |||||| |||| ||||||||
Sbjct 104466 AAGTCGAAGTACAAGGTGGAGTGTGGATTCTTTTTGAATATTGTAGTCGGACAAAGTTCG 104407
Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614
|| || || || || || |||||||| || |||| ||| || ||||| ||||| || ||
Sbjct 104406 TCCGTCCTCGAGTTGTTTGCCAGCGAAAATCAGTCTTTGCTGATCGGGAGGAATGCCCTC 104347
Query 225615 CTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674
|||||||| || || |||||| ||||| ||||| || | || || |||| ||
Sbjct 104346 TTTGTCTTGAATTTTCGCCTTCACGTTCTCGATTGTGTCCGAAGCCTCGACCTCTAGTGT 104287
Query 225675 GATCGTCTTGCCCGTCAAAGTTTT 225698
|| || ||||| || ||||| ||
Sbjct 104286 TATAGTTTTGCCAGTTAAAGTCTT 104263
Score = 125 bits (138), Expect = 2e-23
Identities = 163/223 (73%), Gaps = 2/223 (1%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| |||| || | || |||||||||||||| || | || ||||| | | ||
Sbjct 104241 ACGAAGCCTCAAAACTAAATGCAGAGTGGATTCTTTCTGAATGTTATAATCTGAAAGCGT 104182
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| || || ||||||||||| || |||||||| | | || || || || || || ||
Sbjct 104181 GCGGCCGTCCTCTAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGTGGGATTCC 104122
Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670
|||||| || || || ||| || || || ||||| |||||||| | ||| || || |
Sbjct 104121 TTCCTTATCCTGAAT-TTTGGCTTTGACGTTCTCGATCGTGTCTGACGCTTCAACCTCCA 104063
Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
| ||||| ||||| |||||||| ||||| | ||| | ||||||
Sbjct 104062 ATGTGATGGTCTTTCCCGTCAAGGTTTTGACGAAAATTTGCAT 104020
Score = 98.7 bits (108), Expect = 2e-15
Identities = 133/183 (73%), Gaps = 2/183 (1%)
Strand=Plus/Minus
Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576
|| |||||||| || | ||||| |||| | || | |||||||| || || || |||
Sbjct 103988 GTCGATTCTTTCTGAATGTTGTAGTCGGAAAGTGTACGGCCATCTTCCAGTTGTTTTCCA 103929
Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TT 225635
|||||||| | || || || || || || || |||||||| ||||| || ||| || ||
Sbjct 103928 GCGAAGATTAATCTCTGCTGATCCGGAGGGATTCCTTCCTTATCTTGAAT-TTTGGCTTT 103870
Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695
||| ||| || ||||| || | ||| || || || || || || ||||| || | |||
Sbjct 103869 GACATTTTCAATTGTGTCCGAAGCTTCAACCTCCAATGTAATGGTTTTGCCAGTGAGAGT 103810
Query 225696 TTT 225698
|||
Sbjct 103809 TTT 103807
>seq6771
Length=7421
Score = 129 bits (142), Expect = 1e-24
Identities = 161/221 (73%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
||||| | ||| || || || || || ||||| || |||| || || |||| | ||||
Sbjct 315 CGAAGACGCAGAACCAGATGAAGCGTAGATTCCTTCTGGATGTTATAGTCGGAAAGAGTT 256
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
|| |||||||| || || || ||||| || || || || || || || || ||||| |||
Sbjct 255 CTGCCATCTTCAAGTTGTTTGCCAGCAAAAATTAGACGCTGCTGATCTGGAGGAATGCCT 196
Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672
|| |||||||||||||| || ||| || || |||||||| | ||| || || |
Sbjct 195 TCTTTGTCTTGGATCTTAGCTTTGACATTCTCTATAGTGTCTGAAGCTTCAACTTCGAGG 136
Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| || || || || | |||||||| ||| | |||||
Sbjct 135 GTGATAGTTTTACCAGTGAGAGTTTTTACGAAGATCTGCAT 95
>seq10094
Length=40718
Score = 120 bits (132), Expect = 7e-22
Identities = 89/104 (86%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530
|| || |||||||| ||||||||||| ||||| |||||||| |||||||| ||||||||
Sbjct 15639 AAGATCTGACCATCGGTAATAGAGATTACATTGGTAGGGATGTAAGCAGACACATCACCG 15580
Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACC 4574
||||| ||||||| |||||| || ||||| | |||||||||||
Sbjct 15579 GCTTGCGTTTCGATAACAGGCAAAGCTGTCAACGATCCACCACC 15536
>seq7200
Length=105881
Score = 107 bits (118), Expect = 5e-18
Identities = 144/198 (73%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576
|| ||||||||||| | || ||||| | | || | || || ||||||||||| ||
Sbjct 105565 GTTGATTCTTTTTGAATGTTATAATCTGAAAGCGTGCGGCCGTCCTCTAGCTGCTTTCCG 105506
Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TT 225635
|||||||| | | || || || || || || |||||||| || || || ||| || ||
Sbjct 105505 GCGAAGATCAACCTCTGCTGATCCGGTGGGATTCCTTCCTTATCCTGAAT-TTTGGCTTT 105447
Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695
|| ||||| |||||||| | ||| || || || ||||| ||||| |||||||| ||
Sbjct 105446 GACGTTCTCGATCGTGTCTGACGCTTCAACCTCCAATGTGATGGTCTTTCCCGTCAATGT 105387
Query 225696 TTTTATGAACACTTGCAT 225713
||| | || | ||||||
Sbjct 105386 TTTAACAAAAATTTGCAT 105369
Score = 100 bits (110), Expect = 7e-16
Identities = 143/199 (72%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576
|| ||||||||||| | |||||||| | | || | || || || || || || |||
Sbjct 105337 GTTGATTCTTTTTGAATGTTGTAATCAGAAAGTGTGCGACCGTCCTCAAGTTGTTTGCCA 105278
Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TT 225635
|| ||||| | || ||| || || || ||||| |||||||| ||||| || |||||| ||
Sbjct 105277 GCAAAGATCAATCTTTGCTGATCCGGAGGAATTCCTTCCTTATCTTGAAT-TTTTGCTTT 105219
Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695
|| |||||| ||||| || | || || || || ||||| || || || || | |||
Sbjct 105218 GACGTTTTCGATCGTGTCCGAAGCCTCGACTTCCAATGTGATGGTTTTTCCTGTGAGAGT 105159
Query 225696 TTTTATGAACACTTGCATT 225714
||| | || | ||||||
Sbjct 105158 TTTGACAAAAATCTGCATT 105140
>seq10900
Length=227893
Score = 104 bits (114), Expect = 6e-17
Identities = 137/190 (72%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 225524 CTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGA 225583
||||||| | |||||||| | | || | ||||| ||||| || || ||||||||||
Sbjct 197226 CTTTTTGAATGTTGTAATCTGAAAGGGTGCGTCCATCCTCTAGTTGTTTGCCAGCGAAGA 197285
Query 225584 TAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTT 225643
| |||| || || || || ||||| |||||||| || || ||||| ||| || |
Sbjct 197286 TGAGTCTCTGCTGATCCGGTGGAATTCCTTCCTTATCCTGAATCTTAGCCTTGACGTTCT 197345
Query 225644 CGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGA 225703
||||||| || |||| ||||| || | ||||| ||||| ||||| | || || | ||
Sbjct 197346 CGATGGTATCAGAGGCCTCCACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTCACGA 197405
Query 225704 ACACTTGCAT 225713
| | |||||
Sbjct 197406 AGATCTGCAT 197415
>seq2132
Length=6854
Score = 86.0 bits (94), Expect = 1e-11
Identities = 71/87 (82%), Gaps = 0/87 (0%)
Strand=Plus/Minus
Query 370684 AAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGATGGATCAAAAAA 370743
||| ||||| |||| |||||||||||| |||||||| || || ||| || ||||| ||
Sbjct 3318 AAAGAATCAAAATAGATGTTGATAAAGAATAGGATCACCACCTCCTCTAGGGTCAAAGAA 3259
Query 370744 GCTAGTATTAAAATTTCTATCAGTTAA 370770
| ||||||| ||||||| ||| |||||
Sbjct 3258 GGTAGTATTTAAATTTCGATCTGTTAA 3232
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192345770342384
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |