Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq9711 147 5e-30 seq6771 129 1e-24 seq10094 120 7e-22 seq7200 107 5e-18 seq10900 104 6e-17 seq2132 86.0 1e-11 >seq9711 Length=151070 Score = 147 bits (162), Expect = 5e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554 ||||| || ||||||||||| |||||||||||||| | |||||| |||| |||||||| Sbjct 104466 AAGTCGAAGTACAAGGTGGAGTGTGGATTCTTTTTGAATATTGTAGTCGGACAAAGTTCG 104407 Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614 || || || || || || |||||||| || |||| ||| || ||||| ||||| || || Sbjct 104406 TCCGTCCTCGAGTTGTTTGCCAGCGAAAATCAGTCTTTGCTGATCGGGAGGAATGCCCTC 104347 Query 225615 CTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674 |||||||| || || |||||| ||||| ||||| || | || || |||| || Sbjct 104346 TTTGTCTTGAATTTTCGCCTTCACGTTCTCGATTGTGTCCGAAGCCTCGACCTCTAGTGT 104287 Query 225675 GATCGTCTTGCCCGTCAAAGTTTT 225698 || || ||||| || ||||| || Sbjct 104286 TATAGTTTTGCCAGTTAAAGTCTT 104263 Score = 125 bits (138), Expect = 2e-23 Identities = 163/223 (73%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| |||| || | || |||||||||||||| || | || ||||| | | || Sbjct 104241 ACGAAGCCTCAAAACTAAATGCAGAGTGGATTCTTTCTGAATGTTATAATCTGAAAGCGT 104182 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || ||||||||||| || |||||||| | | || || || || || || || Sbjct 104181 GCGGCCGTCCTCTAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGTGGGATTCC 104122 Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 |||||| || || || ||| || || || ||||| |||||||| | ||| || || | Sbjct 104121 TTCCTTATCCTGAAT-TTTGGCTTTGACGTTCTCGATCGTGTCTGACGCTTCAACCTCCA 104063 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 | ||||| ||||| |||||||| ||||| | ||| | |||||| Sbjct 104062 ATGTGATGGTCTTTCCCGTCAAGGTTTTGACGAAAATTTGCAT 104020 Score = 98.7 bits (108), Expect = 2e-15 Identities = 133/183 (73%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || |||||||| || | ||||| |||| | || | |||||||| || || || ||| Sbjct 103988 GTCGATTCTTTCTGAATGTTGTAGTCGGAAAGTGTACGGCCATCTTCCAGTTGTTTTCCA 103929 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TT 225635 |||||||| | || || || || || || || |||||||| ||||| || ||| || || Sbjct 103928 GCGAAGATTAATCTCTGCTGATCCGGAGGGATTCCTTCCTTATCTTGAAT-TTTGGCTTT 103870 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 ||| ||| || ||||| || | ||| || || || || || || ||||| || | ||| Sbjct 103869 GACATTTTCAATTGTGTCCGAAGCTTCAACCTCCAATGTAATGGTTTTGCCAGTGAGAGT 103810 Query 225696 TTT 225698 ||| Sbjct 103809 TTT 103807 >seq6771 Length=7421 Score = 129 bits (142), Expect = 1e-24 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | ||| || || || || || ||||| || |||| || || |||| | |||| Sbjct 315 CGAAGACGCAGAACCAGATGAAGCGTAGATTCCTTCTGGATGTTATAGTCGGAAAGAGTT 256 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 || |||||||| || || || ||||| || || || || || || || || ||||| ||| Sbjct 255 CTGCCATCTTCAAGTTGTTTGCCAGCAAAAATTAGACGCTGCTGATCTGGAGGAATGCCT 196 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || |||||||||||||| || ||| || || |||||||| | ||| || || | Sbjct 195 TCTTTGTCTTGGATCTTAGCTTTGACATTCTCTATAGTGTCTGAAGCTTCAACTTCGAGG 136 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || || || || | |||||||| ||| | ||||| Sbjct 135 GTGATAGTTTTACCAGTGAGAGTTTTTACGAAGATCTGCAT 95 >seq10094 Length=40718 Score = 120 bits (132), Expect = 7e-22 Identities = 89/104 (86%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 || || |||||||| ||||||||||| ||||| |||||||| |||||||| |||||||| Sbjct 15639 AAGATCTGACCATCGGTAATAGAGATTACATTGGTAGGGATGTAAGCAGACACATCACCG 15580 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACC 4574 ||||| ||||||| |||||| || ||||| | ||||||||||| Sbjct 15579 GCTTGCGTTTCGATAACAGGCAAAGCTGTCAACGATCCACCACC 15536 >seq7200 Length=105881 Score = 107 bits (118), Expect = 5e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||||||||| | || ||||| | | || | || || ||||||||||| || Sbjct 105565 GTTGATTCTTTTTGAATGTTATAATCTGAAAGCGTGCGGCCGTCCTCTAGCTGCTTTCCG 105506 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TT 225635 |||||||| | | || || || || || || |||||||| || || || ||| || || Sbjct 105505 GCGAAGATCAACCTCTGCTGATCCGGTGGGATTCCTTCCTTATCCTGAAT-TTTGGCTTT 105447 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 || ||||| |||||||| | ||| || || || ||||| ||||| |||||||| || Sbjct 105446 GACGTTCTCGATCGTGTCTGACGCTTCAACCTCCAATGTGATGGTCTTTCCCGTCAATGT 105387 Query 225696 TTTTATGAACACTTGCAT 225713 ||| | || | |||||| Sbjct 105386 TTTAACAAAAATTTGCAT 105369 Score = 100 bits (110), Expect = 7e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||||||||| | |||||||| | | || | || || || || || || ||| Sbjct 105337 GTTGATTCTTTTTGAATGTTGTAATCAGAAAGTGTGCGACCGTCCTCAAGTTGTTTGCCA 105278 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TT 225635 || ||||| | || ||| || || || ||||| |||||||| ||||| || |||||| || Sbjct 105277 GCAAAGATCAATCTTTGCTGATCCGGAGGAATTCCTTCCTTATCTTGAAT-TTTTGCTTT 105219 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 || |||||| ||||| || | || || || || ||||| || || || || | ||| Sbjct 105218 GACGTTTTCGATCGTGTCCGAAGCCTCGACTTCCAATGTGATGGTTTTTCCTGTGAGAGT 105159 Query 225696 TTTTATGAACACTTGCATT 225714 ||| | || | |||||| Sbjct 105158 TTTGACAAAAATCTGCATT 105140 >seq10900 Length=227893 Score = 104 bits (114), Expect = 6e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 225524 CTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGA 225583 ||||||| | |||||||| | | || | ||||| ||||| || || |||||||||| Sbjct 197226 CTTTTTGAATGTTGTAATCTGAAAGGGTGCGTCCATCCTCTAGTTGTTTGCCAGCGAAGA 197285 Query 225584 TAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTT 225643 | |||| || || || || ||||| |||||||| || || ||||| ||| || | Sbjct 197286 TGAGTCTCTGCTGATCCGGTGGAATTCCTTCCTTATCCTGAATCTTAGCCTTGACGTTCT 197345 Query 225644 CGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGA 225703 ||||||| || |||| ||||| || | ||||| ||||| ||||| | || || | || Sbjct 197346 CGATGGTATCAGAGGCCTCCACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTCACGA 197405 Query 225704 ACACTTGCAT 225713 | | ||||| Sbjct 197406 AGATCTGCAT 197415 >seq2132 Length=6854 Score = 86.0 bits (94), Expect = 1e-11 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 370684 AAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGATGGATCAAAAAA 370743 ||| ||||| |||| |||||||||||| |||||||| || || ||| || ||||| || Sbjct 3318 AAAGAATCAAAATAGATGTTGATAAAGAATAGGATCACCACCTCCTCTAGGGTCAAAGAA 3259 Query 370744 GCTAGTATTAAAATTTCTATCAGTTAA 370770 | ||||||| ||||||| ||| ||||| Sbjct 3258 GGTAGTATTTAAATTTCGATCTGTTAA 3232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192345770342384