Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq10593 102 7e-17 seq2842 100 2e-16 >seq10593 Length=94130 Score = 102 bits (112), Expect = 7e-17 Identities = 153/216 (71%), Gaps = 1/216 (0%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 || |||| ||||||||| || || || ||||||| || ||||||||||| | ||| Sbjct 2210 AAGTGCCGCCACTGGAAACCATAGACAGGTCCCAAATCGCCCTCTTCCCTATCAGTGAAA 2269 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 || |||||| || | | ||||| || | ||||| || | || || || || Sbjct 2270 CCATAGGAGTCCAAGAAAGCCCGCGAACCATTCTCATCCCAAATATGAACACCTTTATCT 2329 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCC 30196 | | |||||| |||||||| || ||| ||| ||||||||||| ||||| || || || Sbjct 2330 GTCAACTCTTTCGAGTTTGTTGATCCTTTGATAAACCACAGCAGTTCCTCAACTACTGCT 2389 Query 30197 TTCCAAAAGACCCTCTTGGTCGTGAG-GAGGGGAAA 30231 ||| || || |||||||| || || | |||||| Sbjct 2390 CGCCAGAATACTCTCTTGGTTGTCAGTAATGGGAAA 2425 >seq2842 Length=3006 Score = 100 bits (110), Expect = 2e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 29668 GTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTG 29727 ||| | ||| || || ||||| || || || || || ||| | || |||||| | || Sbjct 1920 GTACAGGTGCGCGTCACCCAGCGTATGCACGAAGTCGCCCACGCCCAGGCCGGTGGCCTG 1861 Query 29728 AGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCAT 29787 |||| ||||| || || || | ||||||||||||||| || ||||| ||||| || Sbjct 1860 CGCCACCATGTGGGTCAGCAGCGCGTAGCTGGCGATGTTGAACGGCACACCGAGGAAGAT 1801 Query 29788 GTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGACA 29847 ||| || | |||||| |||||||| ||||| ||||| |||||| ||||| | Sbjct 1800 GTCACCGCTGCGCTGGTACAGCTGGCAGCTGAGCTTGCCGTCCACCACGTAGAACTGGAA 1741 Query 29848 CATGGCATGGCACGG 29862 || | |||||||| Sbjct 1740 CAGGTTGTGGCACGG 1726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406103125416496