Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22]
12,136 sequences; 257,976,923 total letters
Query= NC_030394.2
Length=126965
Score E
Sequences producing significant alignments: (Bits) Value
seq10593 102 7e-17
seq2842 100 2e-16
>seq10593
Length=94130
Score = 102 bits (112), Expect = 7e-17
Identities = 153/216 (71%), Gaps = 1/216 (0%)
Strand=Plus/Plus
Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076
|| |||| ||||||||| || || || ||||||| || ||||||||||| | |||
Sbjct 2210 AAGTGCCGCCACTGGAAACCATAGACAGGTCCCAAATCGCCCTCTTCCCTATCAGTGAAA 2269
Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136
|| |||||| || | | ||||| || | ||||| || | || || || ||
Sbjct 2270 CCATAGGAGTCCAAGAAAGCCCGCGAACCATTCTCATCCCAAATATGAACACCTTTATCT 2329
Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCC 30196
| | |||||| |||||||| || ||| ||| ||||||||||| ||||| || || ||
Sbjct 2330 GTCAACTCTTTCGAGTTTGTTGATCCTTTGATAAACCACAGCAGTTCCTCAACTACTGCT 2389
Query 30197 TTCCAAAAGACCCTCTTGGTCGTGAG-GAGGGGAAA 30231
||| || || |||||||| || || | ||||||
Sbjct 2390 CGCCAGAATACTCTCTTGGTTGTCAGTAATGGGAAA 2425
>seq2842
Length=3006
Score = 100 bits (110), Expect = 2e-16
Identities = 139/195 (71%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 29668 GTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTG 29727
||| | ||| || || ||||| || || || || || ||| | || |||||| | ||
Sbjct 1920 GTACAGGTGCGCGTCACCCAGCGTATGCACGAAGTCGCCCACGCCCAGGCCGGTGGCCTG 1861
Query 29728 AGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCAT 29787
|||| ||||| || || || | ||||||||||||||| || ||||| ||||| ||
Sbjct 1860 CGCCACCATGTGGGTCAGCAGCGCGTAGCTGGCGATGTTGAACGGCACACCGAGGAAGAT 1801
Query 29788 GTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGACA 29847
||| || | |||||| |||||||| ||||| ||||| |||||| ||||| |
Sbjct 1800 GTCACCGCTGCGCTGGTACAGCTGGCAGCTGAGCTTGCCGTCCACCACGTAGAACTGGAA 1741
Query 29848 CATGGCATGGCACGG 29862
|| | ||||||||
Sbjct 1740 CAGGTTGTGGCACGG 1726
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406103125416496
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |