Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq10593 111 1e-19 seq2842 86.0 5e-12 >seq10593 Length=94130 Score = 111 bits (122), Expect = 1e-19 Identities = 168/238 (71%), Gaps = 1/238 (0%) Strand=Plus/Plus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 |||||| |||| || || || || |||| ||| ||||| || || || ||||||| || Sbjct 2188 CATGTCTTTGTATTCGGCGCCAAAGTGCCGCCACTGGAAACCATAGACAGGTCCCAAATC 2247 Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608 ||||||||||| | ||| || |||||| || | | ||||| || | || Sbjct 2248 GCCCTCTTCCCTATCAGTGAAACCATAGGAGTCCAAGAAAGCCCGCGAACCATTCTCATC 2307 Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCA 27668 ||| || | || || || || | | |||||| |||||||| || ||| ||| ||||| Sbjct 2308 CCAAATATGAACACCTTTATCTGTCAACTCTTTCGAGTTTGTTGATCCTTTGATAAACCA 2367 Query 27669 CAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAG-GAGGGGAAA 27725 |||||| ||||| || || || ||| || || |||||||| || || | |||||| Sbjct 2368 CAGCAGTTCCTCAACTACTGCTCGCCAGAATACTCTCTTGGTTGTCAGTAATGGGAAA 2425 >seq2842 Length=3006 Score = 86.0 bits (94), Expect = 5e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 27162 GTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTG 27221 ||| | ||| ||||| ||||| || || || || || ||| | || |||||| | || Sbjct 1920 GTACAGGTGCGCGTCACCCAGCGTATGCACGAAGTCGCCCACGCCCAGGCCGGTGGCCTG 1861 Query 27222 AGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCAT 27281 |||| ||||| || || || | ||||||||||||||| || || || ||||| || Sbjct 1860 CGCCACCATGTGGGTCAGCAGCGCGTAGCTGGCGATGTTGAACGGCACACCGAGGAAGAT 1801 Query 27282 GTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGACA 27341 ||| || | |||||| ||||| || ||||| || || ||||| ||||| | Sbjct 1800 GTCACCGCTGCGCTGGTACAGCTGGCAGCTGAGCTTGCCGTCCACCACGTAGAACTGGAA 1741 Query 27342 TATGGCGTGGCACGG 27356 | | ||||||||| Sbjct 1740 CAGGTTGTGGCACGG 1726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369452547113816