Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22]
12,136 sequences; 257,976,923 total letters
Query= NC_030909.1
Length=50183
Score E
Sequences producing significant alignments: (Bits) Value
seq7345 251 2e-62
>seq7345
Length=15758
Score = 251 bits (278), Expect = 2e-62
Identities = 395/552 (72%), Gaps = 20/552 (4%)
Strand=Plus/Plus
Query 11060 TGCTGATCGACGACCAACCATGGTTCGTTGCTACCGATGTGGCTGCTTCTCTAGGCTATC 11119
|||||||||||| | | || |||||||| ||| |||| | || || |||| || |
Sbjct 4483 TGCTGATCGACGGCGATCCTTGGTTCGTCGCTGCCGACATCGCGGCAGCTCTCCAATACC 4542
Query 11120 CGGCAGCGCCTCAGATGACTCGCAATCTCGATGAAGACGAAAAGGGTATGCAGAATGTGC 11179
| || | ||| || || ||||| || ||||||||||||| |||| ||||
Sbjct 4543 GCGATTCGTTCAACATGTGCCGAAACCTCGACGAGGACGAAAAGGGTACTCAGATTGTGA 4602
Query 11180 ACACCCCTGGCGGCGATCAGGAAATGCTGGTCATCAACGAGTCAGGGCTGTACTCGGCGA 11239
|||| || || | ||||||||||||| ||||||||||| || || ||| |||| |
Sbjct 4603 GTACCCTCGGTGGAGCCCAGGAAATGCTGGCGATCAACGAGTCTGGCCTATACGCGGCCA 4662
Query 11240 TCCTGCGCAGCCGCAAGGCCGAGGCCAAGCGCTTCAAGAAGTGGGTAACCGCCGAGGTGC 11299
||||||| || |||||| ||||| |||| |||||||||||||||||||| ||| ||||
Sbjct 4663 TCCTGCGTAGTCGCAAGCAAGAGGCGAAGCTCTTCAAGAAGTGGGTAACCGGCGAAGTGC 4722
Query 11300 TTCCTGCGATTCGCAAGCATGGTCGCTATGAGGACTCCAGCA--ACAAGATGGCAACCCT 11357
| || || || |||||| |||||||| || || |||||| | ||| ||| ||
Sbjct 4723 TCCCAGCCATCCGCAAGACCGGTCGCTACGACGA--CCAGCAGGGCCGCCTGGTAACTCT 4780
Query 11358 GGTTGGCGAAACCATCGGCACCGACGGCTTCCACATGCTCGGCT-CGCTGATCAAGGGCA 11416
| ||||| |||| ||||||||||||||||||||| ||| |||| | | || | ||||
Sbjct 4781 GATTGGCCAAACTATCGGCACCGACGGCTTCCAC-TGCCTGGCTGCCGTCGTCGATGGCA 4839
Query 11417 AGGTAGCCGCCCTCCCCGTCGAAGTCCGCCGCCGAGCCGCCATGA---AAATCTGGTCAC 11473
|||| || || | |||||| | ||||||| ||||| || | |||||| |
Sbjct 4840 AGGT-GCGGCACCTGCCGTCG--GCGATTCGCCGAGGCGCCAAGAACCACATCTGGAGCC 4896
Query 11474 AGACCCATGCCGCCTTC-GGGTTAGGTCTGCCGCAGACATTCCTGCCAATCAGCTGGATG 11532
|| ||| || ||| | || | | |||| || ||||| ||| | | ||| ||
Sbjct 4897 AGGTGCATAAGGCGTTCAGCGTCGTGACCGCCGAGGATATTCCGGCCGACCGGCTCGACA 4956
Query 11533 CGGCCCGCAACTTCGTCGCCGCCTACAGCGTTCACGAAGGCGAATGGCTGCCGAAGCCTG 11592
|| || |||||| ||||||||||| || || |||||||| |||||||||||| |
Sbjct 4957 GCGCGCGGAACTTCATCGCCGCCTAC-GCCTT--GGAAGGCGAGTGGCTGCCGAAG---G 5010
Query 11593 AAAAACGCTGCG 11604
| ||| ||||||
Sbjct 5011 ATAAA-GCTGCG 5021
Score = 113 bits (124), Expect = 1e-20
Identities = 82/93 (88%), Gaps = 3/93 (3%)
Strand=Plus/Minus
Query 11876 ACGCCGGCTCGATGGCCGGCGTTCGGGAGGATTTGCAGCAGTTGCTGCTCAGTGATAGGC 11935
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 15595 ACGCCGGCTCGAGGGCCGGCGTTCGGGAGGATATGCAGCAGTTGCTGCTCAGTGATGGGC 15536
Query 11936 AT-TCTG--ATCTCCAGGCACAAAAAAGCCCGC 11965
|| | || |||||||| ||||||| || |||
Sbjct 15535 ATCTGTGGTTTCTCCAGGAACAAAAAGGCACGC 15503
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 160440874730640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |