Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_030909.1 Length=50183 Score E Sequences producing significant alignments: (Bits) Value seq7345 251 2e-62 >seq7345 Length=15758 Score = 251 bits (278), Expect = 2e-62 Identities = 395/552 (72%), Gaps = 20/552 (4%) Strand=Plus/Plus Query 11060 TGCTGATCGACGACCAACCATGGTTCGTTGCTACCGATGTGGCTGCTTCTCTAGGCTATC 11119 |||||||||||| | | || |||||||| ||| |||| | || || |||| || | Sbjct 4483 TGCTGATCGACGGCGATCCTTGGTTCGTCGCTGCCGACATCGCGGCAGCTCTCCAATACC 4542 Query 11120 CGGCAGCGCCTCAGATGACTCGCAATCTCGATGAAGACGAAAAGGGTATGCAGAATGTGC 11179 | || | ||| || || ||||| || ||||||||||||| |||| |||| Sbjct 4543 GCGATTCGTTCAACATGTGCCGAAACCTCGACGAGGACGAAAAGGGTACTCAGATTGTGA 4602 Query 11180 ACACCCCTGGCGGCGATCAGGAAATGCTGGTCATCAACGAGTCAGGGCTGTACTCGGCGA 11239 |||| || || | ||||||||||||| ||||||||||| || || ||| |||| | Sbjct 4603 GTACCCTCGGTGGAGCCCAGGAAATGCTGGCGATCAACGAGTCTGGCCTATACGCGGCCA 4662 Query 11240 TCCTGCGCAGCCGCAAGGCCGAGGCCAAGCGCTTCAAGAAGTGGGTAACCGCCGAGGTGC 11299 ||||||| || |||||| ||||| |||| |||||||||||||||||||| ||| |||| Sbjct 4663 TCCTGCGTAGTCGCAAGCAAGAGGCGAAGCTCTTCAAGAAGTGGGTAACCGGCGAAGTGC 4722 Query 11300 TTCCTGCGATTCGCAAGCATGGTCGCTATGAGGACTCCAGCA--ACAAGATGGCAACCCT 11357 | || || || |||||| |||||||| || || |||||| | ||| ||| || Sbjct 4723 TCCCAGCCATCCGCAAGACCGGTCGCTACGACGA--CCAGCAGGGCCGCCTGGTAACTCT 4780 Query 11358 GGTTGGCGAAACCATCGGCACCGACGGCTTCCACATGCTCGGCT-CGCTGATCAAGGGCA 11416 | ||||| |||| ||||||||||||||||||||| ||| |||| | | || | |||| Sbjct 4781 GATTGGCCAAACTATCGGCACCGACGGCTTCCAC-TGCCTGGCTGCCGTCGTCGATGGCA 4839 Query 11417 AGGTAGCCGCCCTCCCCGTCGAAGTCCGCCGCCGAGCCGCCATGA---AAATCTGGTCAC 11473 |||| || || | |||||| | ||||||| ||||| || | |||||| | Sbjct 4840 AGGT-GCGGCACCTGCCGTCG--GCGATTCGCCGAGGCGCCAAGAACCACATCTGGAGCC 4896 Query 11474 AGACCCATGCCGCCTTC-GGGTTAGGTCTGCCGCAGACATTCCTGCCAATCAGCTGGATG 11532 || ||| || ||| | || | | |||| || ||||| ||| | | ||| || Sbjct 4897 AGGTGCATAAGGCGTTCAGCGTCGTGACCGCCGAGGATATTCCGGCCGACCGGCTCGACA 4956 Query 11533 CGGCCCGCAACTTCGTCGCCGCCTACAGCGTTCACGAAGGCGAATGGCTGCCGAAGCCTG 11592 || || |||||| ||||||||||| || || |||||||| |||||||||||| | Sbjct 4957 GCGCGCGGAACTTCATCGCCGCCTAC-GCCTT--GGAAGGCGAGTGGCTGCCGAAG---G 5010 Query 11593 AAAAACGCTGCG 11604 | ||| |||||| Sbjct 5011 ATAAA-GCTGCG 5021 Score = 113 bits (124), Expect = 1e-20 Identities = 82/93 (88%), Gaps = 3/93 (3%) Strand=Plus/Minus Query 11876 ACGCCGGCTCGATGGCCGGCGTTCGGGAGGATTTGCAGCAGTTGCTGCTCAGTGATAGGC 11935 |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 15595 ACGCCGGCTCGAGGGCCGGCGTTCGGGAGGATATGCAGCAGTTGCTGCTCAGTGATGGGC 15536 Query 11936 AT-TCTG--ATCTCCAGGCACAAAAAAGCCCGC 11965 || | || |||||||| ||||||| || ||| Sbjct 15535 ATCTGTGGTTTCTCCAGGAACAAAAAGGCACGC 15503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160440874730640