Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_030931.1 Length=41871 Score E Sequences producing significant alignments: (Bits) Value seq7345 1407 0.0 >seq7345 Length=15758 Score = 1407 bits (1560), Expect = 0.0 Identities = 798/810 (99%), Gaps = 0/810 (0%) Strand=Plus/Plus Query 40658 TGTACTCGCGAGACAGCATCCTTGGCTCGGTTTCGCAGTCGAGCGGCGTACCGACCGGTG 40717 ||||||| ||||||||||| || ||| | ||||||||||||||||||||||||||||||| Sbjct 12287 TGTACTCTCGAGACAGCATTCTGGGCGCCGTTTCGCAGTCGAGCGGCGTACCGACCGGTG 12346 Query 40718 CGGTGATTGATCGCGGGAGTAACGCGAACGGGGAGTATGTGCGGTTCGCGGATGGGACGC 40777 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 12347 CGGTGATTGATCGCGGGAGTAACGCGAACGGGGAGTATGTGCGGTTTGCGGATGGGACGC 12406 Query 40778 AGATATGCACGATGAGTATCAATGTCAACGACCAGGCCATCGACTCTGCCTACGGCTCTC 40837 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12407 AGATATGCACGATGAGTATCAATGTCAACGACCAGGCCATCGACTCTGCCTACGGCTCTC 12466 Query 40838 TCTTCCAAGGTGCTAGGACGTGGTCATTCCCGGTGGCATTTTCGGGTGTGCCGGCGGTGT 40897 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12467 TCTTCCAAGGTGCTAGGACGTGGTCATTCCCGGTGGCATTTTCGGGTGTGCCGGCGGTGT 12526 Query 40898 CCGTGGGTTTGTTTCGGTGGGGTTCAGCCGCGAGTTGGGGAAGTGTCGCAACCCTCCCCA 40957 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12527 CCGTGGGTTTGTTTCGGTGGGGTTCAGCCGCGAGTTGGGGAAGTGTCGCAACCCTCCCCA 12586 Query 40958 GCACTACATCTGCAACGTTGCGAGGTTTCGATATTGCGGCGCGGCCTGCAGGGACCTCTA 41017 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12587 GCACTACATCTGCAACGTTGCGAGGTTTCGATATTGCGGCGCGGCCTGCAGGGACCTCTA 12646 Query 41018 CCGCTATTTCTGCAACGGCCATTGGGAGGTGGTTCTGATGAACTTCTTGCTGGTTCTTTC 41077 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12647 CCGCTATTTCTGCAACGGCCATTGGGAGGTGGTTCTGATGAACTTCTTGCTGGTTCTTTC 12706 Query 41078 GCCGCAGTACGGGCCCGCGGAATTTGGCGACTACACCACTGTGTCGGTTTCCGGCGGCGT 41137 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12707 GCCGCAGTACGGGCCCGCGGAATTTGGCGACTACACCACTGTGTCGGTTTCCGGCGGCGT 12766 Query 41138 GCTTACCGTCGAGGATCGTGACTATGCGTTCCCAGACATCGAAGACGGCGCCGAGCTCAC 41197 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12767 GCTTACCGTCGAGGATCGTGACTATGCGTTCCCAGACATCGAAGACGGCGCCGAGCTCAC 12826 Query 41198 GATGGATGACTTCGCCGATCCATATCCCGTCTACCAGGTTCGGCGGCGAGGCGACACGAT 41257 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12827 GATGGATGACTTCGCCGATCCATATCCCGTCTACCAGGTTCGGCGGCGAGGCGACACGAT 12886 Query 41258 TTCGGTGTGGATCATTTACAGATATCCGGCAGATGCGACCCATGCTGCCAGATACCCCGA 41317 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12887 TTCGGTGTGGATCATTTACAGATATCCGGCAGATGCGACCCATGCTGCCAGATACCCCGA 12946 Query 41318 GCCGGTTTCCGTTCCGGGTGATTTCGACGGGCCTGTTGATCTGCCGAGGTGAAAGCCAAG 41377 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12947 GCCGGTTTCCGTTCCGGGTGATTTCGACGGGCCTGTTGATCTGCCGAGGTGAAAGCCAAG 13006 Query 41378 GTCGAGGAGATCAAGGCCAGGTATCCGCTGCCGGACGCTAGCGGCGTGTAGACTACCCAT 41437 ||||||||||||||||| |||||||||| |||||||||| ||||||||||| |||||||| Sbjct 13007 GTCGAGGAGATCAAGGCTAGGTATCCGCGGCCGGACGCTGGCGGCGTGTAGGCTACCCAT 13066 Query 41438 TTTGAATGGGAGCATGGCCGTGCTGGTGGT 41467 |||||||||| ||||||||||||| ||||| Sbjct 13067 TTTGAATGGGGGCATGGCCGTGCTTGTGGT 13096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133846307959056