Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_031010.1 Length=246390 Score E Sequences producing significant alignments: (Bits) Value seq2842 181 2e-40 seq5641 89.7 8e-13 >seq2842 Length=3006 Score = 181 bits (200), Expect = 2e-40 Identities = 162/203 (80%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 202540 GAAAAGAAAGACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGTTT 202599 || |||| ||||| ||||| ||||| || ||| | ||||||| |||||||| || Sbjct 1342 GAGAAGAGCGACCGCACCGGTACCGGTACCCGCAGCGTGTTCGGCTGGCAGATGCGCTTC 1401 Query 202600 GACCTGACCGAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCATT 202659 ||||| | |||||||||||| ||||| ||||| || ||| | ||||| || || ||||| Sbjct 1402 GACCTCAACGAAGGCTTCCCGCTGGTCACCACCAAGAAGCTGCACCTGCGCTCGATCATC 1461 Query 202660 CACGAGCTGCTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCTGAACGATAACGGG 202719 ||||||||||||||||||||||| || |||||||||||| | |||||||| || ||| | Sbjct 1462 CACGAGCTGCTGTGGTTCCTGAAGGGCGACACCAACATCGGCTACCTGAAGGACAACCAG 1521 Query 202720 GTCACTATCTGGGACGAATGGGC 202742 || ||||||||||| ||||| Sbjct 1522 GTGCGGATCTGGGACGAGTGGGC 1544 >seq5641 Length=1322 Score = 89.7 bits (98), Expect = 8e-13 Identities = 74/89 (83%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 2256 GGCGGGTTACTCAAGCGGC-AACGAGAGCAGACTGTAAATCTGTTGACTTCGGTCTTCGG 2314 || ||| ||| |||||||| |||| | |||||||||||||||| || ||| | |||||| Sbjct 880 GGAGGGATACCCAAGCGGCCAACGGGGGCAGACTGTAAATCTGCTGGCTTACGCCTTCGG 939 Query 2315 TGGTTCGAGTCCACCACACGCCACCAGTT 2343 |||||||| |||||| | | ||||||||| Sbjct 940 TGGTTCGAATCCACCTCCCTCCACCAGTT 968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 788200411856000