Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq10234 140 5e-28 seq10678 125 1e-23 seq5599 87.8 2e-12 >seq10234 Length=192330 Score = 140 bits (154), Expect = 5e-28 Identities = 233/334 (70%), Gaps = 6/334 (2%) Strand=Plus/Plus Query 77524 TACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAA 77583 ||||||||||||| ||||| | ||| || |||| | ||||| ||||||||| |||||| Sbjct 2462 TACCAATAGGTCTGTGTCTTTGATTAGATGTTTTCGTCTCTGGGATAGGATAAAAATTAA 2521 Query 77584 TGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAA 77643 ||| || | ||||| ||||| | || | ||| | || || |||||| || Sbjct 2522 CGTCAATGACTTTATCTAGATTGCGGGTGACAATTTTTGCGACTGTTTTAAGTTTATCAA 2581 Query 77644 AATCAAA--TCTTCC-ATCTATA---ACAAACATGTTCAAAGCTATAGATGCTAGATTAC 77697 ||||||| |||| |||| || ||||||||||| | ||| |||||||||| ||| | Sbjct 2582 AATCAAAAGTCTTGGTATCTGTATTAACAAACATGTTGACAGCAATAGATGCTAAATTGC 2641 Query 77698 AAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATT 77757 | || || || || || | ||||| | || || ||||| ||||| ||||||| Sbjct 2642 ACACAGCAACTTCTCCAGGACCAGAATATTCAACAATTTCAGTACACAGATTGCTACATT 2701 Query 77758 TGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAA 77817 |||||||||| | || || || || ||| ||| ||| || |||||||| ||| Sbjct 2702 TGATAGTGCCTATATGCTGGTGATTCGATTTTCGATTACATTGATCTTTATAAAGCATAT 2761 Query 77818 ACGGAGTCCCGGTTTCAATCTGTGATTCGATAAT 77851 | || || || || || | || ||| || ||| Sbjct 2762 AAGGTGTTCCAGTCTCTACTTGGGATCTGAGAAT 2795 Score = 120 bits (132), Expect = 4e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 78405 GCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGA-AAGTAGATTGTATGT 78463 || ||||||| ||| || || ||||||||||| || |||||| || || |||||| || Sbjct 3603 GCGTTAAATAGTGTTGGTGAAGCATGCGTAAAATATCGTTCAGACAAATA-ATTGTACGT 3661 Query 78464 TTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATG 78523 || |||||| || ||||| || ||||| || || || || | |||||||||||| Sbjct 3662 CTCTATAGCTTTGTCAATGTCATTTTCGTGAATACCAACAGCCACTCTCATCAACATATG 3721 Query 78524 CTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTT 78583 ||||| || ||||| | || ||| ||||||| || || | | || | ||||| Sbjct 3722 TTGAGGCCTCTCAACTATTTTGCCATTAATTTTCAGCAGATAGCTTCTCTCGAGTGTTTT 3781 Query 78584 AAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAATAACAGAAT 78633 |||||||| ||| || || ||||||| || || || ||| |||||| Sbjct 3782 AAAACCAATATAATTATAATTGAAGTCTCGATCATATATTATAGCAGAAT 3831 Score = 93.3 bits (102), Expect = 6e-14 Identities = 123/169 (73%), Gaps = 4/169 (2%) Strand=Plus/Plus Query 77067 ATATCATCATTCCACAATTTCCTCT--CTGTTAAAACTCTAAGGAGATGAGGATTAACTA 77124 ||||| |||| ||| ||| ||||| | || ||| ||| || ||||| ||||| || | Sbjct 1813 ATATCTTCATCCCATAAT--CCTCTGGCAGTCAAATCTCGTAGCAGATGCGGATTGACGA 1870 Query 77125 TTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAG 77184 | ||| |||||||| ||||| | | ||| ||||| || || || ||||| | | Sbjct 1871 TGACAAACTCTCCAGATAATACGCGCCTCACGTAGATATTGCTCGTGTACGGTTCAATGG 1930 Query 77185 ATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGC 77233 |||| || || || ||||| || || || || || |||||||||||||| Sbjct 1931 ATTCGTTATTCCCTAAAATCTGTGCCGTCGAGGCCGTTGGCATAGGTGC 1979 Score = 86.0 bits (94), Expect = 9e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 78753 ttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGCATAATCA 78812 || || |||||||||||||| ||||| ||| | ||||||||||||| |||||||||||| Sbjct 4076 TTCTTGGTTTCCTTGTGTAGGTTAGACACATCAATTCTTGCAGCTAATATAGCATAATCA 4135 Query 78813 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATC 78859 || || | || | ||| ||||| |||| ||||| | | |||| Sbjct 4136 GGGTGATTAGTTGCCATAGTAGCTGCAGTTTCAGCCGCAAGATTATC 4182 >seq10678 Length=68604 Score = 125 bits (138), Expect = 1e-23 Identities = 161/220 (73%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 48390 TTTTCATTGCTATCTTTAACGTAAGTATCTATTA--AAAGACTATACATTTCGGAGTGAA 48447 ||||| || ||| ||| ||||| || || | ||||| |||||||||||| |||| Sbjct 45511 TTTTCTTTTGGATCGGTAATATAAGTTTCAATGAGCAAAGA--ATACATTTCGGAATGAA 45454 Query 48448 TATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCG 48507 |||| || || ||||| || || ||||| ||||| | ||||| | || | |||||| Sbjct 45453 TATTCTCTATGGCCATTTGGAAGCCGTAGAAACAACGTGCTTCAGCGACTTTCACCTCCT 45394 Query 48508 TACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTA 48567 || |||| |||| || |||||| || || || |||||| ||| || |||||||| | Sbjct 45393 GACTGAATCTTTCAATCAGATTCTCGTTAACAATACCATCAGAAGCGGCGAAAAATGCCA 45334 Query 48568 ATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTT 48607 | ||||| ||||| ||| |||||| |||| | ||||| Sbjct 45333 AGACATGAGAGATAAAGTATCTTTCGTCGGAACTTAGTTT 45294 Score = 93.3 bits (102), Expect = 6e-14 Identities = 153/217 (71%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 47945 TTTTTTAAATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCAT 48004 ||||| |||||||||| | | | ||| |||||||| ||||| ||||| | ||| Sbjct 46291 TTTTTCAAATCCTAATGCAACGAATAATCTGTCTGCAACAAATTCGATATAGTTACACAT 46232 Query 48005 CATTTCACAATTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTC 48064 | | |||||||| ||||| || | || || | |||| ||| | ||| || | ||| Sbjct 46231 GAGTGTGCAATTCATGCCTATCAGCTCGACCGGCAACGCCTGCGTCAAAAATTCCTTTTC 46172 Query 48065 GATAGTGACAGCATCCACTATTATCGATGTTAC-CGTTTCCTCACTTGGTGGATACA--A 48121 ||| |||||||||| ||| || ||| |||| |||| || || || | | Sbjct 46171 GATTTCCACAGCATCCATTATGATTGATTTTACACGTT----CAAATGACGGCTTTTGTA 46116 Query 48122 CAAA-TGTTTAAACATTAAACATGCAAAATCACAATG 48157 ||| |||||||||||||||||||||||||| || || Sbjct 46115 CAATGTGTTTAAACATTAAACATGCAAAATCGCAGTG 46079 >seq5599 Length=16320 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/193 (72%), Gaps = 6/193 (3%) Strand=Plus/Minus Query 78455 ATTGTATGTTTCAATAGCTGATTCTATGTCC-CATTGATGAATTCCTACCGCTACACGCA 78513 ||| |||||||||||| | || ||||| || | ||||| ||||| || || |||| Sbjct 13585 ATTATATGTTTCAATAACCTTATCAATGTCTTCACCG-TGAATACCTACAGCCACTCGCA 13527 Query 78514 TCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTT 78573 ||||||||||||| || |||||||| || ||| | |||||||||| ||||| | Sbjct 13526 TCAACATATGCTGCGGCCTTTCAACAACTTTTCCATTCAGTTTCAACAAG--TGATTACT 13469 Query 78574 CCAAAG--TTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAATAACAGA 78631 | ||| ||||||| || ||| | || ||| ||||| || || || || |||| Sbjct 13468 CTCAAGCATTTTAAATGTAACATAACTATAATTAAAATCTCTATCATATATTATTGCAGA 13409 Query 78632 ATTTAGTTTATCT 78644 ||||| || ||| Sbjct 13408 ATTTAACTTGTCT 13396 Score = 86.0 bits (94), Expect = 9e-12 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 78739 CATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTA 78798 || ||||||| | || |||||||||||||| ||||| |||| || ||||| || |||| Sbjct 13217 CACCACTAAAGACCTTCTTTGTTTCCTTGTGCAGATTGGATATGGCAATTCTAGCTGCTA 13158 Query 78799 GAATAGCATAATCAGGATGTTGTGTAGTACA-AGTGGCTGCTATTTCTGCCGCTAAAATA 78857 | || ||||| ||||| || || | || ||| || || |||| || || ||| || Sbjct 13157 AGGTTGCGTAATCTGGATGCTG-GTTGATCATAGTTGCCGCAGTTTCAGCTGCCAAATTA 13099 Query 78858 TCTAACTCTATAGTTGTGACCCCA 78881 || || || |||||||| || ||| Sbjct 13098 TCCAATTCGATAGTTGTTACTCCA 13075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694563418743040