Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22]
12,136 sequences; 257,976,923 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq10678 120 4e-22
seq10234 111 2e-19
seq5599 89.7 7e-13
>seq10678
Length=68604
Score = 120 bits (132), Expect = 4e-22
Identities = 150/204 (74%), Gaps = 4/204 (2%)
Strand=Plus/Minus
Query 46895 TAACATATGTATCTATTA--AAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCAT 46952
||| ||| || || || | ||||| ||||||||| |||||||| || || || |||||
Sbjct 45495 TAATATAAGTTTCAATGAGCAAAGA--ATACATTTCGGAATGAATATTCTCTATGGCCAT 45438
Query 46953 CTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGA 47012
|| || ||||| ||||| | |||||||| | | ||||| || |||| ||||
Sbjct 45437 TTGGAAGCCGTAGAAACAACGTGCTTCAGCGACTTTCACCTCCTGACTGAATCTTTCAAT 45378
Query 47013 CAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAA 47072
|| |||||| || || || |||||| ||| || ||||||||||| ||||| |||||
Sbjct 45377 CAGATTCTCGTTAACAATACCATCAGAAGCGGCGAAAAATGCCAAGACATGAGAGATAAA 45318
Query 47073 ATATTTTTCATCGGTAGTCAGTTT 47096
||| |||| |||| | | |||||
Sbjct 45317 GTATCTTTCGTCGGAACTTAGTTT 45294
>seq10234
Length=192330
Score = 111 bits (122), Expect = 2e-19
Identities = 228/335 (68%), Gaps = 8/335 (2%)
Strand=Plus/Plus
Query 76119 TACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAA 76178
||||||||||||| ||||| | ||| || ||| | ||||| ||||| ||| ||||||
Sbjct 2462 TACCAATAGGTCTGTGTCTTTGATTAGATGTTTTCGTCTCTGGGATAGGATAAAAATTAA 2521
Query 76179 TATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAA 76238
|| || | ||||| ||||| | | || | ||| | || || ||||| ||
Sbjct 2522 CGTCAATGACTTTATCTAGATTGCGGGTGACAATTTTTGCGACTGTTTTAAGTTTATCAA 2581
Query 76239 AATCAAA---TTTTCCATCT---ATCACAAACATATTAAGAGCTATAGATGCTAGATTAC 76292
||||||| || |||| | |||||||| || | ||| |||||||||| ||| |
Sbjct 2582 AATCAAAAGTCTTGGTATCTGTATTAACAAACATGTTGACAGCAATAGATGCTAAATTGC 2641
Query 76293 AAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACT 76352
| || || || || || | | ||||| | || || || || ||||| ||||| |
Sbjct 2642 ACACAGCAACTTCTCCAGGACCAGAATATTCAACAATTTCAGTACACAGATTGCTACATT 2701
Query 76353 TGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTG-TTACATGAGTCCTTATAAAGAACA 76411
||||||| || | || || || || | |||| | |||||| || |||||||| | |
Sbjct 2702 TGATAGTGCCTATATGCTGGTGATT-CGATTTTCGATTACATTGATCTTTATAAAGCATA 2760
Query 76412 AACGGAGTTCCAGTTTCAATCTGTGATTCGATAAT 76446
| || |||||||| || | || ||| || |||
Sbjct 2761 TAAGGTGTTCCAGTCTCTACTTGGGATCTGAGAAT 2795
Score = 89.7 bits (98), Expect = 7e-13
Identities = 183/272 (67%), Gaps = 0/272 (0%)
Strand=Plus/Plus
Query 75662 ATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAATT 75721
|| || |||| ||| ||| ||| | || ||| ||| || ||||| ||||| || ||
Sbjct 1813 ATATCTTCATCCCATAATCCTCTGGCAGTCAAATCTCGTAGCAGATGCGGATTGACGATG 1872
Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781
||| |||||||| ||||| | | ||| ||||| || || || ||||| | |||
Sbjct 1873 ACAAACTCTCCAGATAATACGCGCCTCACGTAGATATTGCTCGTGTACGGTTCAATGGAT 1932
Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841
|| || || || ||||| || || || || || || ||||||||||| | || | |
Sbjct 1933 TCGTTATTCCCTAAAATCTGTGCCGTCGAGGCCGTTGGCATAGGTGCTATTAAAAGCGAA 1992
Query 75842 TTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAT 75901
|| || | || || | ||| || || | | | ||||||||| ||||||| |
Sbjct 1993 TTCCTCACTCCGTGCTTCGCGATCTTCCTCTTCAATTCATCCCAATCCCACAGATCTGTT 2052
Query 75902 GGTACAACATCCCAGAGATCGTATTGTAGAAT 75933
||| ||| | ||| | || ||||| || ||
Sbjct 2053 GGTTTAACGTTCCACATGTCATATTGGAGGAT 2084
Score = 89.7 bits (98), Expect = 7e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 76519 TTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGA 76578
|| |||||| || |||||||| ||| ||||||||||| |||||| |||||||| ||
Sbjct 2985 TTTAAATTCGTCACCCCAAACGTCAGCCAAACCAGGAGATTCATATGGACACATTAAGCT 3044
Query 76579 CCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 76638
|||| |||| | | || |||| ||| || ||||| |||||||| ||| || |||
Sbjct 3045 CCACATCTCATCGTTGTACACACGTTCCATGAAAAGATCCGGTATCCACAGACCATAAAA 3104
Query 76639 TAGATCTCGGGTTC 76652
|| |||| || ||
Sbjct 3105 TAAGTCTCTGGCTC 3118
Score = 89.7 bits (98), Expect = 7e-13
Identities = 166/241 (69%), Gaps = 2/241 (1%)
Strand=Plus/Plus
Query 77000 GCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGA-AAGTAGATTGTATGT 77058
|| ||||| | ||| || || ||||| || || || |||||| || || |||||| ||
Sbjct 3603 GCGTTAAATAGTGTTGGTGAAGCATGCGTAAAATATCGTTCAGACAAATA-ATTGTACGT 3661
Query 77059 TTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATG 77118
|| ||| || || || || || ||||| || ||||| || | ||||||||||||
Sbjct 3662 CTCTATAGCTTTGTCAATGTCATTTTCGTGAATACCAACAGCCACTCTCATCAACATATG 3721
Query 77119 CTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTT 77178
||||| | || || | || ||| ||||||| || || | | || | |||||
Sbjct 3722 TTGAGGCCTCTCAACTATTTTGCCATTAATTTTCAGCAGATAGCTTCTCTCGAGTGTTTT 3781
Query 77179 AAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGAATTTAGTTTGTC 77238
|||||||| ||| || || ||||||| || || || ||| | |||| ||| | ||
Sbjct 3782 AAAACCAATATAATTATAATTGAAGTCTCGATCATATATTATAGCAGAATCCAGTCTCTC 3841
Query 77239 C 77239
|
Sbjct 3842 C 3842
>seq5599
Length=16320
Score = 89.7 bits (98), Expect = 7e-13
Identities = 104/138 (75%), Gaps = 2/138 (1%)
Strand=Plus/Minus
Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398
||||| | || |||||||||||||| ||||| |||| ||| |||||||| |||| ||
Sbjct 13212 CTAAAGACCTTCTTTGTTTCCTTGTGCAGATTGGATATGGCAATTCTAGCTGCTAAGGTT 13153
Query 77399 GCATAGTCAGGATGTTGTGTAGTGCA-GGTGGCTGCTATTTCTGCCGCTAAAGTATCTAA 77457
|| || || ||||| || || | || || || || |||| || || ||| |||| ||
Sbjct 13152 GCGTAATCTGGATGCTG-GTTGATCATAGTTGCCGCAGTTTCAGCTGCCAAATTATCCAA 13094
Query 77458 TTCTATAGTAGTAACTCC 77475
||| ||||| || |||||
Sbjct 13093 TTCGATAGTTGTTACTCC 13076
Score = 86.0 bits (94), Expect = 9e-12
Identities = 137/192 (71%), Gaps = 6/192 (3%)
Strand=Plus/Minus
Query 77050 ATTGTATGTTTCAATAACTGCTTCTATATCC-CATTGATGAATTCCTACAGCGACACGCA 77108
||| |||||||||||||| || || || || | ||||| |||||||| || ||||
Sbjct 13585 ATTATATGTTTCAATAACCTTATCAATGTCTTCACCG-TGAATACCTACAGCCACTCGCA 13527
Query 77109 TCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTT 77168
||||||||||||| || | ||| ||| || ||| | |||||||||| ||||| |
Sbjct 13526 TCAACATATGCTGCGGCCTTTCAACAACTTTTCCATTCAGTTTCAACAAG--TGATTACT 13469
Query 77169 CCAAAG--TTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGA 77226
| ||| ||||||| || ||| | || ||| ||||| || || || || | ||
Sbjct 13468 CTCAAGCATTTTAAATGTAACATAACTATAATTAAAATCTCTATCATATATTATTGCAGA 13409
Query 77227 ATTTAGTTTGTC 77238
||||| |||||
Sbjct 13408 ATTTAACTTGTC 13397
Score = 86.0 bits (94), Expect = 9e-12
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 76508 GTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGA 76567
||||| || |||||||||||| |||||| | ||| || ||||||||||||| |||
Sbjct 14292 GTATACAAAGCTTCAAATTCATCACCCCAAGCTTCAATTAATCCAGGACATTCATGTGGA 14233
Query 76568 CACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCAT 76627
|||||||| |||| | |||| | | ||| ||||||||||| | ||| || ||||
Sbjct 14232 CACATCAAACTCCACATATCATCATTATAAACACGTTTCATAAATAAATCTGGAGTCCAC 14173
Query 76628 AG 76629
||
Sbjct 14172 AG 14171
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712826247851520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |