Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq10678 120 4e-22 seq10234 111 2e-19 seq5599 89.7 7e-13 >seq10678 Length=68604 Score = 120 bits (132), Expect = 4e-22 Identities = 150/204 (74%), Gaps = 4/204 (2%) Strand=Plus/Minus Query 46895 TAACATATGTATCTATTA--AAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCAT 46952 ||| ||| || || || | ||||| ||||||||| |||||||| || || || ||||| Sbjct 45495 TAATATAAGTTTCAATGAGCAAAGA--ATACATTTCGGAATGAATATTCTCTATGGCCAT 45438 Query 46953 CTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGA 47012 || || ||||| ||||| | |||||||| | | ||||| || |||| |||| Sbjct 45437 TTGGAAGCCGTAGAAACAACGTGCTTCAGCGACTTTCACCTCCTGACTGAATCTTTCAAT 45378 Query 47013 CAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAA 47072 || |||||| || || || |||||| ||| || ||||||||||| ||||| ||||| Sbjct 45377 CAGATTCTCGTTAACAATACCATCAGAAGCGGCGAAAAATGCCAAGACATGAGAGATAAA 45318 Query 47073 ATATTTTTCATCGGTAGTCAGTTT 47096 ||| |||| |||| | | ||||| Sbjct 45317 GTATCTTTCGTCGGAACTTAGTTT 45294 >seq10234 Length=192330 Score = 111 bits (122), Expect = 2e-19 Identities = 228/335 (68%), Gaps = 8/335 (2%) Strand=Plus/Plus Query 76119 TACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAA 76178 ||||||||||||| ||||| | ||| || ||| | ||||| ||||| ||| |||||| Sbjct 2462 TACCAATAGGTCTGTGTCTTTGATTAGATGTTTTCGTCTCTGGGATAGGATAAAAATTAA 2521 Query 76179 TATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAA 76238 || || | ||||| ||||| | | || | ||| | || || ||||| || Sbjct 2522 CGTCAATGACTTTATCTAGATTGCGGGTGACAATTTTTGCGACTGTTTTAAGTTTATCAA 2581 Query 76239 AATCAAA---TTTTCCATCT---ATCACAAACATATTAAGAGCTATAGATGCTAGATTAC 76292 ||||||| || |||| | |||||||| || | ||| |||||||||| ||| | Sbjct 2582 AATCAAAAGTCTTGGTATCTGTATTAACAAACATGTTGACAGCAATAGATGCTAAATTGC 2641 Query 76293 AAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACT 76352 | || || || || || | | ||||| | || || || || ||||| ||||| | Sbjct 2642 ACACAGCAACTTCTCCAGGACCAGAATATTCAACAATTTCAGTACACAGATTGCTACATT 2701 Query 76353 TGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTG-TTACATGAGTCCTTATAAAGAACA 76411 ||||||| || | || || || || | |||| | |||||| || |||||||| | | Sbjct 2702 TGATAGTGCCTATATGCTGGTGATT-CGATTTTCGATTACATTGATCTTTATAAAGCATA 2760 Query 76412 AACGGAGTTCCAGTTTCAATCTGTGATTCGATAAT 76446 | || |||||||| || | || ||| || ||| Sbjct 2761 TAAGGTGTTCCAGTCTCTACTTGGGATCTGAGAAT 2795 Score = 89.7 bits (98), Expect = 7e-13 Identities = 183/272 (67%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 75662 ATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAATT 75721 || || |||| ||| ||| ||| | || ||| ||| || ||||| ||||| || || Sbjct 1813 ATATCTTCATCCCATAATCCTCTGGCAGTCAAATCTCGTAGCAGATGCGGATTGACGATG 1872 Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||| |||||||| ||||| | | ||| ||||| || || || ||||| | ||| Sbjct 1873 ACAAACTCTCCAGATAATACGCGCCTCACGTAGATATTGCTCGTGTACGGTTCAATGGAT 1932 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 || || || || ||||| || || || || || || ||||||||||| | || | | Sbjct 1933 TCGTTATTCCCTAAAATCTGTGCCGTCGAGGCCGTTGGCATAGGTGCTATTAAAAGCGAA 1992 Query 75842 TTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAT 75901 || || | || || | ||| || || | | | ||||||||| ||||||| | Sbjct 1993 TTCCTCACTCCGTGCTTCGCGATCTTCCTCTTCAATTCATCCCAATCCCACAGATCTGTT 2052 Query 75902 GGTACAACATCCCAGAGATCGTATTGTAGAAT 75933 ||| ||| | ||| | || ||||| || || Sbjct 2053 GGTTTAACGTTCCACATGTCATATTGGAGGAT 2084 Score = 89.7 bits (98), Expect = 7e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 76519 TTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGA 76578 || |||||| || |||||||| ||| ||||||||||| |||||| |||||||| || Sbjct 2985 TTTAAATTCGTCACCCCAAACGTCAGCCAAACCAGGAGATTCATATGGACACATTAAGCT 3044 Query 76579 CCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 76638 |||| |||| | | || |||| ||| || ||||| |||||||| ||| || ||| Sbjct 3045 CCACATCTCATCGTTGTACACACGTTCCATGAAAAGATCCGGTATCCACAGACCATAAAA 3104 Query 76639 TAGATCTCGGGTTC 76652 || |||| || || Sbjct 3105 TAAGTCTCTGGCTC 3118 Score = 89.7 bits (98), Expect = 7e-13 Identities = 166/241 (69%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 77000 GCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGA-AAGTAGATTGTATGT 77058 || ||||| | ||| || || ||||| || || || |||||| || || |||||| || Sbjct 3603 GCGTTAAATAGTGTTGGTGAAGCATGCGTAAAATATCGTTCAGACAAATA-ATTGTACGT 3661 Query 77059 TTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATG 77118 || ||| || || || || || ||||| || ||||| || | |||||||||||| Sbjct 3662 CTCTATAGCTTTGTCAATGTCATTTTCGTGAATACCAACAGCCACTCTCATCAACATATG 3721 Query 77119 CTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTT 77178 ||||| | || || | || ||| ||||||| || || | | || | ||||| Sbjct 3722 TTGAGGCCTCTCAACTATTTTGCCATTAATTTTCAGCAGATAGCTTCTCTCGAGTGTTTT 3781 Query 77179 AAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGAATTTAGTTTGTC 77238 |||||||| ||| || || ||||||| || || || ||| | |||| ||| | || Sbjct 3782 AAAACCAATATAATTATAATTGAAGTCTCGATCATATATTATAGCAGAATCCAGTCTCTC 3841 Query 77239 C 77239 | Sbjct 3842 C 3842 >seq5599 Length=16320 Score = 89.7 bits (98), Expect = 7e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 ||||| | || |||||||||||||| ||||| |||| ||| |||||||| |||| || Sbjct 13212 CTAAAGACCTTCTTTGTTTCCTTGTGCAGATTGGATATGGCAATTCTAGCTGCTAAGGTT 13153 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCA-GGTGGCTGCTATTTCTGCCGCTAAAGTATCTAA 77457 || || || ||||| || || | || || || || |||| || || ||| |||| || Sbjct 13152 GCGTAATCTGGATGCTG-GTTGATCATAGTTGCCGCAGTTTCAGCTGCCAAATTATCCAA 13094 Query 77458 TTCTATAGTAGTAACTCC 77475 ||| ||||| || ||||| Sbjct 13093 TTCGATAGTTGTTACTCC 13076 Score = 86.0 bits (94), Expect = 9e-12 Identities = 137/192 (71%), Gaps = 6/192 (3%) Strand=Plus/Minus Query 77050 ATTGTATGTTTCAATAACTGCTTCTATATCC-CATTGATGAATTCCTACAGCGACACGCA 77108 ||| |||||||||||||| || || || || | ||||| |||||||| || |||| Sbjct 13585 ATTATATGTTTCAATAACCTTATCAATGTCTTCACCG-TGAATACCTACAGCCACTCGCA 13527 Query 77109 TCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTT 77168 ||||||||||||| || | ||| ||| || ||| | |||||||||| ||||| | Sbjct 13526 TCAACATATGCTGCGGCCTTTCAACAACTTTTCCATTCAGTTTCAACAAG--TGATTACT 13469 Query 77169 CCAAAG--TTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGA 77226 | ||| ||||||| || ||| | || ||| ||||| || || || || | || Sbjct 13468 CTCAAGCATTTTAAATGTAACATAACTATAATTAAAATCTCTATCATATATTATTGCAGA 13409 Query 77227 ATTTAGTTTGTC 77238 ||||| ||||| Sbjct 13408 ATTTAACTTGTC 13397 Score = 86.0 bits (94), Expect = 9e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 76508 GTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGA 76567 ||||| || |||||||||||| |||||| | ||| || ||||||||||||| ||| Sbjct 14292 GTATACAAAGCTTCAAATTCATCACCCCAAGCTTCAATTAATCCAGGACATTCATGTGGA 14233 Query 76568 CACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCAT 76627 |||||||| |||| | |||| | | ||| ||||||||||| | ||| || |||| Sbjct 14232 CACATCAAACTCCACATATCATCATTATAAACACGTTTCATAAATAAATCTGGAGTCCAC 14173 Query 76628 AG 76629 || Sbjct 14172 AG 14171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712826247851520