Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_031043.1 Length=229501 Score E Sequences producing significant alignments: (Bits) Value seq2842 105 1e-17 >seq2842 Length=3006 Score = 105 bits (116), Expect = 1e-17 Identities = 133/180 (74%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 99585 GAAGGTTTTCCTCTGGTCACTACTAAGC-GCTGTCACCTCCGTTCTATTATTCATGAACT 99643 ||||| || || |||||||| || ||| |||| ||||| || || || || || || || Sbjct 1411 GAAGGCTTCCCGCTGGTCACCACCAAGAAGCTG-CACCTGCGCTCGATCATCCACGAGCT 1469 Query 99644 CCTTTGGTTCCTGAAAGGGGATACCAATACCCAGTACCTGAAAGATAACGGCGTCACTAT 99703 || ||||||||||| || || ||||| | | |||||||| || ||| || || Sbjct 1470 GCTGTGGTTCCTGAAGGGCGACACCAACATCGGCTACCTGAAGGACAACCAGGTGCGGAT 1529 Query 99704 CTGGAATGAGTGGGAAAACGAGAACGGTGACTTAGGACCGGTATACGGAAAGCAGTGGCG 99763 |||| | ||||||| ||||||| || ||| | || ||||| ||||| | ||||||||| Sbjct 1530 CTGGGACGAGTGGGCCGACGAGAATGGCGACCTCGGCCCGGTCTACGGCAGGCAGTGGCG 1589 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 100172 CTGTCAACTCTACCAACGTAGCGCGGACGTGTTCTTAGGTGTGCCGTTCAATATCGCGTC 100231 ||| || || ||||| || |||| ||| | ||| | |||||||||||||| ||||| Sbjct 1773 CTGCCAGCTGTACCAGCGCAGCGGTGACATCTTCCTCGGTGTGCCGTTCAACATCGCCAG 1832 Query 100232 GTACGCTCTGCTGGTTCACATGTTTGCACAACAAGCCAACATGGCCGTGGGCGACTTCGT 100291 ||||| |||||| |||||| | || || || | ||| ||||||||||||||| Sbjct 1833 CTACGCGCTGCTGACCCACATGGTGGCGCAGGCCACCGGCCTGGGCGTGGGCGACTTCGT 1892 Query 100292 CTGGACGGGTGGTGACGTACATCTGTATTCCAACCA 100327 ||| ||||||| || ||||| || ||||| Sbjct 1893 GCATACGCTGGGTGACGCGCACCTGTACTCGAACCA 1928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 734163810452160