Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_031048.1 Length=41918 Score E Sequences producing significant alignments: (Bits) Value seq8165 206 7e-49 >seq8165 Length=1351 Score = 206 bits (228), Expect = 7e-49 Identities = 453/671 (68%), Gaps = 21/671 (3%) Strand=Plus/Plus Query 17446 CCGTCTAACCAGGAAATCTACGGCATCCAGGGAACTGCGCGCCAGATTGATTTCGTTCTG 17505 ||||| |||| ||| || |||| | || || || || ||| || |||| ||| Sbjct 1 CCGTCGAACCTGGAGCTCAACGGTGTGGTCGGTACCGCACGTGCGATCGACTTCGGTCTC 60 Query 17506 GGTGACGCTTCCAGCCGTGCCAACCTGCTGAACGAAAACGAA-GTGGCCACGATTATTCG 17564 || || |||||| ||||||||||||||| || |||| ||||| || || || || Sbjct 61 TCCGATGCGAGCAGCCGCGCCAACCTGCTGAAC-CAATCGAACGTGGCGACCATCATCCG 119 Query 17565 CCAGGACGGTTTCCGCCTGTGGGGTAACCGCACCTGTTCAAGCGATCAGAAATGGGCATT 17624 | | | || |||||||||||||| ||||| ||| ||||| ||||| ||| || Sbjct 120 CGAAGGTGGCTTCCGCCTGTGGGGCAACCGTACCGCCAGCAGCGACCAGAAGTGGCAGTT 179 Query 17625 CCTGTGCGTGGTGCGTACCGCTGACATCATCAATGACAGCCTGGCGCGTAACCACATGTG 17684 |||||| |||||||| || || |||||||| |||||||| | | ||| |||| Sbjct 180 CCTGTGTGTGGTGCGCACTGCCGACATCATTGCCGACAGCCTCGAGGCCGCCCATCTGTG 239 Query 17685 GGCGGTTGACCGTGGCATCACCAAAAATTACGTCACTGACGTTATTGAAGGTGTTAGCAA 17744 ||| || ||||| ||||||| ||| | |||||| ||||| ||| ||||| ||| Sbjct 240 GGCCGTCGACCGCGGCATCAGCAAGACCTACGTCGACGACGTGCGTGAGGGTGT---CAA 296 Query 17745 T---TATCTGCGATACTT----AACCAGTATTGGTGCCATCCTCGGTGGTTCGTGCTGGG 17797 | | ||||| | | | |||| ||||| |||||||| || ||||||| Sbjct 297 TGCCTTCCTGCGCGGCCTGAAGACCCAG----GGTGCGATCCTCGGCGGCAACTGCTGGG 352 Query 17798 CTGACCCGGACCTGAACACCCCGGACCAGATCGCACAGGGCAAAATCTTTTTTGATTTTG 17857 ||||| ||||||||| | ||||| | || |||||| ||| | || || | Sbjct 353 TCGACCCCGACCTGAACGCAGCGGACAGCGTGGCCCAGGGCCGCTTCTACTGGGACTTCG 412 Query 17858 ATTTCACGCCAGTGTACCCGGCAGAACACATCACGTTCCGCAGCCACCTGGTCAATGATT 17917 | ||||| || ||||||| || || | || ||||||| ||| || ||| | | Sbjct 413 ACTTCACCCCGACCTACCCGGGTGAGCAGCTGACCTTCCGCATGCACATGAACAACAACT 472 Query 17918 ACGTTCAGGAGATTTTTGAATAATGGCCGCACGCGACGTTCGCAAGAACCTAAACCTGTT 17977 |||| |||||| || || ||| || ||| | | ||||| ||| | || | | Sbjct 473 ACGTCTCGGAGATCTTCTAAGCATG---GCGCGCAAGATCCGCAAAAACTTCAATTTCTA 529 Query 17978 CGTTGATGGCCGGGGTTACGCTGGCCAGATCGAAGA-TTTCAACGCGCCGAAACTGACGC 18036 ||| || ||| |||||| || || ||| || || |||| ||| || || ||||||| Sbjct 530 CGTCGACGGCAAGGGTTATGCCGG-CAGCGTGATGACCTTCACCGCTCCCAAGCTGACGC 588 Query 18037 TGACCACGGAAGAATTCCGGGGCGGTGGCATGAACGCGCCGATTGACATCACAACAGGTC 18096 ||| || || || |||| || ||| |||||| ||| |||| || ||| || | Sbjct 589 TGAAGACCGAGGACTTCCAGGCCGGCGGCATGCTCGCACCGACCGAAATCGTCCTCGGCC 648 Query 18097 ATGAAAAGCTG 18107 | ||||||||| Sbjct 649 ACGAAAAGCTG 659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133996686284160