Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_031074.1 Length=92580 Score E Sequences producing significant alignments: (Bits) Value seq2842 271 5e-68 >seq2842 Length=3006 Score = 271 bits (300), Expect = 5e-68 Identities = 527/755 (70%), Gaps = 31/755 (4%) Strand=Plus/Plus Query 836 GATCGCACCGGCACCGGCACGCTGAGCAAGTTCGGCGCCCAGCTGCGGTACGACCTCACC 895 || |||||||| ||||| || | ||| ||||||| ||| |||| | |||||||| | Sbjct 1351 GACCGCACCGGTACCGGTACCCGCAGCGTGTTCGGCTGGCAGATGCGCTTCGACCTCAAC 1410 Query 896 GAGGGCTTCCCGCTGGTCACCACGAAGCGCGTCCACTTCAAATCGGTTGCGTACGAACTT 955 || |||||||||||||||||||| ||| | ||| | ||| | |||| || Sbjct 1411 GAAGGCTTCCCGCTGGTCACCACCAAGAAGCTGCACCTGCGCTCGATCATCCACGAGCTG 1470 Query 956 CTGTGGTTCCTCAGTGGCGACACGAACGTGAAGGCG--CTCAACGACAACGGCGTCACCA 1013 ||||||||||| | |||||||| ||| | ||| || || |||||| || | Sbjct 1471 CTGTGGTTCCTGAAGGGCGACACCAACATC--GGCTACCTGAAGGACAACCAGGTGCGGA 1528 Query 1014 TCTGGGACGAGTGGGCCGACGCCGGCGGAAACCTCGGTCCTGTCTACGGCGCGCAGTGGC 1073 ||||||||||||||||||||| || ||||||| || ||||||||| |||||||| Sbjct 1529 TCTGGGACGAGTGGGCCGACGAGAATGGCGACCTCGGCCCGGTCTACGGCAGGCAGTGGC 1588 Query 1074 GGCACTGGCATGTCGAGGACGGAGGATCGTCGTGGATTGACCAGATCTCGGCCGCCG-TG 1132 | |||| || ||||| | || | || |||||||| | | || | || Sbjct 1589 GAAGCTGGGCCACCGCTGACGGCCG-----CGAG-ATCGACCAGATG-CAGTGGCTGGTG 1641 Query 1133 GAGCTGCTTC-GCGAGGACCCTGACTCGCGCCGGAACGTGGTATCCGCATGGAACGTCGG 1191 || | | ||| |||| || ||||||||| ||||| ||| |||||||| || Sbjct 1642 GACGAGATCAAGCGCA-ACCCCGATTCGCGCCGGCTGGTGGTCAGCGCCTGGAACGTGGG 1700 Query 1192 TGACCTCAGCGACATGGCACTTCACCCGTGCCACATCATGTTCCAGCTGTACGTCGTCGA 1251 || || | ||||| || |||||||||| | |||||||| | ||||| || || Sbjct 1701 CGAGCTTTCGCAGATGGCGCTGATGCCGTGCCACAACCTGTTCCAGTTCTACGTGGTGGA 1760 Query 1252 CGGCCGGCTCTCGCTGC-AGGTCTACCAGCGCAGCGCGGACATGTTCCTCGGTGTGCCGT 1310 |||| |||| ||||| || | ||||||||||||| ||||| |||||||||||||||| Sbjct 1761 CGGCAAGCTCA-GCTGCCAGCTGTACCAGCGCAGCGGTGACATCTTCCTCGGTGTGCCGT 1819 Query 1311 TCAATATCGCCTCGTACGCGCTCCTCGCGCACATGTTCGCGCAGCAGGCCGGCCTGCGGG 1370 |||| |||||| |||||||| || | |||||| | |||||| |||||||| | | Sbjct 1820 TCAACATCGCCAGCTACGCGCTGCTGACCCACATGGTGGCGCAGGCCACCGGCCTGGGCG 1879 Query 1371 TGGGTGAGCTGATC-TGGACCGGC--GGCGACTGCCACATCTACAACAACCACGTCGACC 1427 |||| || || || || | || || ||| ||| | ||| |||||| |||| | Sbjct 1880 TGGGCGA-CT--TCGTGCATACGCTGGGTGACGCGCACCTGTACTCGAACCACTTCGAGC 1936 Query 1428 AGGCGCTGATGCAGCTCCGCCGACGACCGCG-GCCCTACCCGAGGCTCGTGCTACACCAC 1486 |||| | |||||| || |||||| || || |||| ||| ||| | | | | Sbjct 1937 AGGCCCGCGAGCAGCTGTCGCGTGAACCGCGCGCGCT-GCCGACGCT-GTGGTTGAACCC 1994 Query 1487 GCGCCGT---CGA--TCTTCGACTACCGGTACGAGCACATCCACCTCGTGAACTACGACC 1541 | | || ||| | |||| || || || ||| |||||| | ||| ||||||| Sbjct 1995 G-GAGGTGACCGACCTGTTCGGCTTCCAGTTCGACGACATCCGCATCGACGGGTACGACC 2053 Query 1542 CGCACCCGTCGATCAAGGCGCCGGTGGCCGTCTGA 1576 |||||||| ||||||||||||||||||| || ||| Sbjct 2054 CGCACCCGGCGATCAAGGCGCCGGTGGCGGTATGA 2088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 296087399974536