Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_031078.1 Length=50082 Score E Sequences producing significant alignments: (Bits) Value seq3733 176 1e-39 >seq3733 Length=4163 Score = 176 bits (194), Expect = 1e-39 Identities = 217/295 (74%), Gaps = 4/295 (1%) Strand=Plus/Plus Query 40115 CCCGTACTTCTCGGTGACGTACCTGATCACGTCGCCCCGTCGCCGGTCATC--GAAGTCG 40172 ||||||||| | |||||| |||||| ||| | || || | ||| ||||||| Sbjct 2461 CCCGTACTTGCGTGCGACGTAGTCGATCACTTCGTCGCGGCG--GTCCATGCAGAAGTCG 2518 Query 40173 ATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCG 40232 ||||| | ||||||||| |||||||| || || || ||||| |||||||| | || | Sbjct 2519 ATGTCGAAGTCGGGCATCGACACGCGTTCCGGATTGAGGAAGCGCTCGAACAGCAGGTTG 2578 Query 40233 TGCGGGATGGGGTCCAGGTCTGTGATGCCGAGGCAGTAGGCGACCAGCGAACCGGCAGCC 40292 | ||| | ||||||||||| ||||| || | || ||||||||||||||| || Sbjct 2579 TACGGCAGCGGGTCCAGGTCGGTGATCTTCAGCGCCCACGCCACCAGCGAACCGGCACCC 2638 Query 40293 GAGCCACGTCCGGGTCCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCG 40352 || ||||| ||||| |||| | | ||| | | |||| |||| |||||||||||| Sbjct 2639 GAACCACGGCCGGGACCGATCGGGATGCCCTGGTTCTTGCCCCACTGGATGAAGTCGGCC 2698 Query 40353 ACGACCAGGAAGTAGGACGGGAACCCCAGCTGGATGATCATGTCGATCTCGTACT 40407 |||| |||||||||| |||||| |||| || |||||| ||| || |||| ||| Sbjct 2699 ACGATCAGGAAGTAGCCCGGGAAGCCCATCTTGATGATGGTGTTGAGCTCGAACT 2753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160117721308608