Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_031107.1 Length=246291 Score E Sequences producing significant alignments: (Bits) Value seq2842 197 2e-45 >seq2842 Length=3006 Score = 197 bits (218), Expect = 2e-45 Identities = 192/247 (78%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 201847 CGACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTACA 201906 |||||| |||||||| || |||| | || ||||| | ||||||||||| || | | Sbjct 1350 CGACCGCACCGGTACCGGTACCCGCAGCGTGTTCGGCTGGCAGATGCGCTTCGACCTCAA 1409 Query 201907 AGAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGCT 201966 ||||| || ||||||||||||||||| ||| | ||||| || || |||||||| ||||| Sbjct 1410 CGAAGGCTTCCCGCTGGTCACCACCAAGAAGCTGCACCTGCGCTCGATCATCCACGAGCT 1469 Query 201967 GCTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCAT 202026 |||||||||||| | ||| |||||||||||| || |||| |||||| | || || Sbjct 1470 GCTGTGGTTCCTGAAGGGCGACACCAACATCGGCTACCTGAAGGACAACCAGGTGCGGAT 1529 Query 202027 CTGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGGCG 202086 ||||||||| ||||| || | || || ||| | |||||||| ||||| | ||| ||||| Sbjct 1530 CTGGGACGAGTGGGCCGACGAGAATGGCGACCTCGGCCCGGTCTACGGCAGGCAGTGGCG 1589 Query 202087 TAGCTGG 202093 |||||| Sbjct 1590 AAGCTGG 1596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 787883659914560