Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_031127.1 Length=240761 Score E Sequences producing significant alignments: (Bits) Value seq2842 219 6e-52 >seq2842 Length=3006 Score = 219 bits (242), Expect = 6e-52 Identities = 200/250 (80%), Gaps = 2/250 (1%) Strand=Plus/Plus Query 196061 CGAGAA-AGCTGACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTT 196119 |||||| ||| ||||| ||||| || || ||| | | ||||| | |||||||| | Sbjct 1341 CGAGAAGAGC-GACCGCACCGGTACCGGTACCCGCAGCGTGTTCGGCTGGCAGATGCGCT 1399 Query 196120 TTGACCTGCGCAAAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCA 196179 | ||||| | |||| |||||||||||||||||||| ||| |||||||||| || |||| Sbjct 1400 TCGACCTCAACGAAGGCTTCCCGCTGGTCACCACCAAGAAGCTGCACCTGCGCTCGATCA 1459 Query 196180 TCCACGAACTGTTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACA 196239 ||||||| ||| ||||||||||||| ||||||||||||||| || ||||| |||||| Sbjct 1460 TCCACGAGCTGCTGTGGTTCCTGAAGGGCGACACCAACATCGGCTACCTGAAGGACAACC 1519 Query 196240 ACGTCAGTATCTGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTA 196299 | || | |||||||| |||||||| || || ||||||| || ||||| |||||||| | Sbjct 1520 AGGTGCGGATCTGGGACGAGTGGGCCGACGAGAATGGCGACCTCGGCCCGGTCTACGGCA 1579 Query 196300 AGCAGTGGCG 196309 ||||||||| Sbjct 1580 GGCAGTGGCG 1589 Score = 102 bits (112), Expect = 1e-16 Identities = 151/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 196754 CTGTCAGCTTTACCAGCGCAGTGCAGACGTCTTCCTCGGTGTCCCGTTCAACATCGCTTC 196813 ||| ||||| ||||||||||| | ||| ||||||||||||| |||||||||||||| Sbjct 1773 CTGCCAGCTGTACCAGCGCAGCGGTGACATCTTCCTCGGTGTGCCGTTCAACATCGCCAG 1832 Query 196814 GTACGCTCTGTTGGTTCACATGGTGGCACAGCAGGTCA---ATATGGTGGCGGGTGATTT 196870 ||||| ||| || ||||||||||| ||||| || ||| | ||| || || Sbjct 1833 CTACGCGCTGCTGACCCACATGGTGGC---GCAGGCCACCGGCCTGGGCGTGGGCGACTT 1889 Query 196871 CGTCTGGACGGGCGGCGATACCCATCTGTACTCTAACCATCTGGAACAGGCCACGTTGCA 196930 ||| ||| || || | || |||||||| ||||| | || |||||| ||| Sbjct 1890 CGTGCATACGCTGGGTGACGCGCACCTGTACTCGAACCACTTCGAGCAGGCCCGCGAGCA 1949 Query 196931 GCTCTCCCGTGTACCGCATGATCTGCCTAAGCT 196963 ||| || |||| ||||| | ||||| | ||| Sbjct 1950 GCTGTCGCGTGAACCGCGCGCGCTGCCGACGCT 1982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 770190344397760