Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22]
12,136 sequences; 257,976,923 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq9711 127 5e-24
seq6771 123 6e-23
seq10900 122 2e-22
seq7200 113 1e-19
>seq9711
Length=151070
Score = 127 bits (140), Expect = 5e-24
Identities = 156/213 (73%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
||| || | ||| | || || ||||| || |||||||| |||| | || | |||||
Sbjct 104004 GAGAACCAAATGCAAGGTCGATTCTTTCTGAATGTTGTAGTCGGAAAGTGTACGGCCATC 103945
Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
||| || ||| || |||||||| | |||||||| |||| | |||||||||||| ||
Sbjct 103944 TTCCAGTTGTTTTCCAGCGAAGATTAATCTCTGCTGATCCGGAGGGATTCCTTCCTTATC 103885
Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071
||||||||| ||||||| | || | |||| ||| || || || | ||||| ||
Sbjct 103884 TTGAATTTTGGCTTTGACATTTTCAATTGTGTCCGAAGCTTCAACCTCCAATGTAATGGT 103825
Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|||||| |||||||| || || || | ||||||
Sbjct 103824 TTTGCCAGTGAGAGTTTTAACAAAAATCTGCAT 103792
Score = 111 bits (122), Expect = 4e-19
Identities = 157/221 (71%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943
|| |||| || ||||| || || || || |||||||| || ||||| |||| ||||||
Sbjct 104468 CTAAGTCGAAGTACAAGGTGGAGTGTGGATTCTTTTTGAATATTGTAGTCGGACAAAGTT 104409
Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003
| || || || || ||| || ||||| || || || ||||| || | | || ||
Sbjct 104408 CGTCCGTCCTCGAGTTGTTTGCCAGCGAAAATCAGTCTTTGCTGATCGGGAGGAATGCCC 104349
Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063
|| || ||||||||||| || || |||| | |||| ||| ||| || || ||
Sbjct 104348 TCTTTGTCTTGAATTTTCGCCTTCACGTTCTCGATTGTGTCCGAAGCCTCGACCTCTAGT 104289
Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| ||||||||||| || | |||||| || || | ||||||
Sbjct 104288 GTTATAGTTTTGCCAGTTAAAGTCTTGACAAATATCTGCAT 104248
Score = 105 bits (116), Expect = 2e-17
Identities = 148/206 (72%), Gaps = 4/206 (2%)
Strand=Plus/Minus
Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--G 151958
||| ||||| || ||||| || ||||| ||||| | | || | || || ||||| |
Sbjct 104223 ATGCAGAGTGGATTCTTTCTGAATGTTATAATCTGAAAGCGTGCGGCCGTCCTCTAGCTG 104164
Query 151959 CTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATT 152018
|||| ||||||||||| | ||||||||| |||| | |||||||||||| || ||||||
Sbjct 104163 CTTT--CCGGCGAAGATCAACCTCTGCTGATCCGGTGGGATTCCTTCCTTATCCTGAATT 104106
Query 152019 TTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCC 152078
|| |||||| |||| | ||||||| || || || | || || || || |||
Sbjct 104105 TTGGCTTTGACGTTCTCGATCGTGTCTGACGCTTCAACCTCCAATGTGATGGTCTTTCCC 104046
Query 152079 GTGAGAGTCTTCACGAAGACCTGCAT 152104
|| | || || ||||| | |||||
Sbjct 104045 GTCAAGGTTTTGACGAAAATTTGCAT 104020
>seq6771
Length=7421
Score = 123 bits (136), Expect = 6e-23
Identities = 149/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961
|| || || || || ||||||||||||||||| | | ||| || |||||||| || |
Sbjct 525 TGGAGTGTTGATTCCTTTTGGATGTTGTAATCTGAAAGAGTCCTGCCATCTTCAAGCTGT 466
Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021
|| || ||||| || || | ||| || |||| | ||||| || || || || |||||
Sbjct 465 TTGCCAGCGAAAATTAGACGCTGTTGATCCGGGGGAATTCCCTCTTTGTCCTGGATTTTA 406
Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081
||| || |||||| | || ||| || |||||||| || |||||||| || |||
Sbjct 405 GCTTTCACGTTCTCTATAGTATCCGAAGCTTCAACTTCAAGGGTGATAGTTTTACCGGTG 346
Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104
||||| || ||||||| ||||||
Sbjct 345 AGAGTTTTTACGAAGATCTGCAT 323
>seq10900
Length=227893
Score = 122 bits (134), Expect = 2e-22
Identities = 141/190 (74%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 151915 CTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGA 151974
||||||| ||||||||||| | | || | ||||| ||||| ||| || |||||||
Sbjct 197226 CTTTTTGAATGTTGTAATCTGAAAGGGTGCGTCCATCCTCTAGTTGTTTGCCAGCGAAGA 197285
Query 151975 TAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCT 152034
| || |||||||| |||| | ||||||||||| || ||||| || ||||| |||
Sbjct 197286 TGAGTCTCTGCTGATCCGGTGGAATTCCTTCCTTATCCTGAATCTTAGCCTTGACGTTCT 197345
Query 152035 CTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGA 152094
| | | | || || ||| || || || || || || || |||||||| ||||||||||
Sbjct 197346 CGATGGTATCAGAGGCCTCCACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTCACGA 197405
Query 152095 AGACCTGCAT 152104
||| ||||||
Sbjct 197406 AGATCTGCAT 197415
>seq7200
Length=105881
Score = 113 bits (124), Expect = 1e-19
Identities = 155/217 (71%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948
|| ||| || | ||| | || || |||||||| ||||||||||| | | || | ||
Sbjct 105356 TCGGAGAACTAAATGCAACGTTGATTCTTTTTGAATGTTGTAATCAGAAAGTGTGCGACC 105297
Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008
|| || || ||| || || ||||| | || ||||| |||| | |||||||||||
Sbjct 105296 GTCCTCAAGTTGTTTGCCAGCAAAGATCAATCTTTGCTGATCCGGAGGAATTCCTTCCTT 105237
Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068
|||||||||||| |||||| | || | |||| ||| ||| ||||| | || ||
Sbjct 105236 ATCTTGAATTTTTGCTTTGACGTTTTCGATCGTGTCCGAAGCCTCGACTTCCAATGTGAT 105177
Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105
||||| || |||||||| || || || | |||||||
Sbjct 105176 GGTTTTTCCTGTGAGAGTTTTGACAAAAATCTGCATT 105140
Score = 111 bits (122), Expect = 4e-19
Identities = 150/208 (72%), Gaps = 1/208 (0%)
Strand=Plus/Minus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| |||||||| || || |||||||| ||||| || | || || | || ||||| |
Sbjct 104891 CAAG-TGAAGAGTCGATTCCTTTTGGATATTGTAGTCAGACAAGGTACGTCCGTCTTCAA 104833
Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016
| ||| || || ||||| | | ||||||||| | | ||| ||||| || || ||||
Sbjct 104832 GCTGTTTTCCAGCAAAGATCAAACGCTGCTGGTCAGGTGGGATGCCTTCTTTGTCCTGAA 104773
Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076
| ||| ||| || |||| | |||| ||| ||| || |||||||| || || || |
Sbjct 104772 TCTTTGCTTTCACGTTCTCGATAGTGTCAGAAGCCTCAACCTCAAGAGTTATGGTCTTTC 104713
Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104
| || | ||||||||||| | ||||||
Sbjct 104712 CAGTCAACGTCTTCACGAAAATCTGCAT 104685
Score = 98.7 bits (108), Expect = 2e-15
Identities = 152/215 (71%), Gaps = 4/215 (2%)
Strand=Plus/Minus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
||| || | ||| | || || |||||||| ||||| ||||| | | || | || ||
Sbjct 105581 GAGAACTAAATGCAACGTTGATTCTTTTTGAATGTTATAATCTGAAAGCGTGCGGCCGTC 105522
Query 151952 TTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009
||||| ||||| ||||||||||| | ||||||||| |||| | ||||||||||||
Sbjct 105521 CTCTAGCTGCTTT--CCGGCGAAGATCAACCTCTGCTGATCCGGTGGGATTCCTTCCTTA 105464
Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069
|| |||||||| |||||| |||| | ||||||| || || || | || ||
Sbjct 105463 TCCTGAATTTTGGCTTTGACGTTCTCGATCGTGTCTGACGCTTCAACCTCCAATGTGATG 105404
Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || ||||| | || || || || | |||||
Sbjct 105403 GTCTTTCCCGTCAATGTTTTAACAAAAATTTGCAT 105369
Score = 91.5 bits (100), Expect = 3e-13
Identities = 148/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
||| || | ||| | || || ||||| || || ||||| || | | || | |||||
Sbjct 105809 GAGAACCAAATGCAAGGTTGATTCTTTCTGAATATTGTAGTCAGAAAGTGTACGACCATC 105750
Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
||| || ||| ||||| ||||| | |||||| || || | | |||||||||||| ||
Sbjct 105749 TTCCAGCTGTTTTCCGGCAAAGATTAACCTCTGTTGATCTGGAGGGATTCCTTCCTTATC 105690
Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071
|||||||| ||||||| | || | |||| || ||| ||||| | ||||| ||
Sbjct 105689 CTGAATTTTGGCTTTGACATTTTCGATCGTGTCCGATGCCTCAACTTCCAATGTAATGGT 105630
Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || | || || ||||| | |||||
Sbjct 105629 CTTTCCAGTCAATGTTTTAACGAAAATTTGCAT 105597
Score = 89.7 bits (98), Expect = 1e-12
Identities = 141/200 (71%), Gaps = 4/200 (2%)
Strand=Plus/Minus
Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTCC 151965
|| || || ||||| || || ||||| | | ||| | ||||| || || ||||| |
Sbjct 105109 GTTGATTCCTTTTGAATATTATAATCTGAGAGAGTACGACCATCCTCAAGTTGCTTT--C 105052
Query 151966 CGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTT 152025
| || ||||| | |||||||| || | | ||| ||||| || ||||||||||| ||
Sbjct 105051 CAGCAAAGATCAATCTCTGCTGATCTGGTGGGATGCCTTCTTTATCTTGAATTTTCGCTT 104992
Query 152026 TGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAG 152085
||||| |||| | | || ||| |||||| || | ||| || || || || || || |
Sbjct 104991 TGACATTCTCAATCGTATCAGAAGCCTCTACCTCCAAAGTGATGGTCTTTCCAGTCAGGG 104932
Query 152086 TCTTCACGAAGACCTGCATT 152105
| || || || | |||||||
Sbjct 104931 TTTTAACAAAAATCTGCATT 104912
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153641389519256
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |