Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq9711 127 5e-24 seq6771 123 6e-23 seq10900 122 2e-22 seq7200 113 1e-19 >seq9711 Length=151070 Score = 127 bits (140), Expect = 5e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || | ||| | || || ||||| || |||||||| |||| | || | ||||| Sbjct 104004 GAGAACCAAATGCAAGGTCGATTCTTTCTGAATGTTGTAGTCGGAAAGTGTACGGCCATC 103945 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| || ||| || |||||||| | |||||||| |||| | |||||||||||| || Sbjct 103944 TTCCAGTTGTTTTCCAGCGAAGATTAATCTCTGCTGATCCGGAGGGATTCCTTCCTTATC 103885 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||||||||| ||||||| | || | |||| ||| || || || | ||||| || Sbjct 103884 TTGAATTTTGGCTTTGACATTTTCAATTGTGTCCGAAGCTTCAACCTCCAATGTAATGGT 103825 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||| |||||||| || || || | |||||| Sbjct 103824 TTTGCCAGTGAGAGTTTTAACAAAAATCTGCAT 103792 Score = 111 bits (122), Expect = 4e-19 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || |||| || ||||| || || || || |||||||| || ||||| |||| |||||| Sbjct 104468 CTAAGTCGAAGTACAAGGTGGAGTGTGGATTCTTTTTGAATATTGTAGTCGGACAAAGTT 104409 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | || || || || ||| || ||||| || || || ||||| || | | || || Sbjct 104408 CGTCCGTCCTCGAGTTGTTTGCCAGCGAAAATCAGTCTTTGCTGATCGGGAGGAATGCCC 104349 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 || || ||||||||||| || || |||| | |||| ||| ||| || || || Sbjct 104348 TCTTTGTCTTGAATTTTCGCCTTCACGTTCTCGATTGTGTCCGAAGCCTCGACCTCTAGT 104289 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||||||||| || | |||||| || || | |||||| Sbjct 104288 GTTATAGTTTTGCCAGTTAAAGTCTTGACAAATATCTGCAT 104248 Score = 105 bits (116), Expect = 2e-17 Identities = 148/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--G 151958 ||| ||||| || ||||| || ||||| ||||| | | || | || || ||||| | Sbjct 104223 ATGCAGAGTGGATTCTTTCTGAATGTTATAATCTGAAAGCGTGCGGCCGTCCTCTAGCTG 104164 Query 151959 CTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATT 152018 |||| ||||||||||| | ||||||||| |||| | |||||||||||| || |||||| Sbjct 104163 CTTT--CCGGCGAAGATCAACCTCTGCTGATCCGGTGGGATTCCTTCCTTATCCTGAATT 104106 Query 152019 TTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCC 152078 || |||||| |||| | ||||||| || || || | || || || || ||| Sbjct 104105 TTGGCTTTGACGTTCTCGATCGTGTCTGACGCTTCAACCTCCAATGTGATGGTCTTTCCC 104046 Query 152079 GTGAGAGTCTTCACGAAGACCTGCAT 152104 || | || || ||||| | ||||| Sbjct 104045 GTCAAGGTTTTGACGAAAATTTGCAT 104020 >seq6771 Length=7421 Score = 123 bits (136), Expect = 6e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 || || || || || ||||||||||||||||| | | ||| || |||||||| || | Sbjct 525 TGGAGTGTTGATTCCTTTTGGATGTTGTAATCTGAAAGAGTCCTGCCATCTTCAAGCTGT 466 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || ||||| || || | ||| || |||| | ||||| || || || || ||||| Sbjct 465 TTGCCAGCGAAAATTAGACGCTGTTGATCCGGGGGAATTCCCTCTTTGTCCTGGATTTTA 406 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 ||| || |||||| | || ||| || |||||||| || |||||||| || ||| Sbjct 405 GCTTTCACGTTCTCTATAGTATCCGAAGCTTCAACTTCAAGGGTGATAGTTTTACCGGTG 346 Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104 ||||| || ||||||| |||||| Sbjct 345 AGAGTTTTTACGAAGATCTGCAT 323 >seq10900 Length=227893 Score = 122 bits (134), Expect = 2e-22 Identities = 141/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 151915 CTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGA 151974 ||||||| ||||||||||| | | || | ||||| ||||| ||| || ||||||| Sbjct 197226 CTTTTTGAATGTTGTAATCTGAAAGGGTGCGTCCATCCTCTAGTTGTTTGCCAGCGAAGA 197285 Query 151975 TAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCT 152034 | || |||||||| |||| | ||||||||||| || ||||| || ||||| ||| Sbjct 197286 TGAGTCTCTGCTGATCCGGTGGAATTCCTTCCTTATCCTGAATCTTAGCCTTGACGTTCT 197345 Query 152035 CTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGA 152094 | | | | || || ||| || || || || || || || |||||||| |||||||||| Sbjct 197346 CGATGGTATCAGAGGCCTCCACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTCACGA 197405 Query 152095 AGACCTGCAT 152104 ||| |||||| Sbjct 197406 AGATCTGCAT 197415 >seq7200 Length=105881 Score = 113 bits (124), Expect = 1e-19 Identities = 155/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 || ||| || | ||| | || || |||||||| ||||||||||| | | || | || Sbjct 105356 TCGGAGAACTAAATGCAACGTTGATTCTTTTTGAATGTTGTAATCAGAAAGTGTGCGACC 105297 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 || || || ||| || || ||||| | || ||||| |||| | ||||||||||| Sbjct 105296 GTCCTCAAGTTGTTTGCCAGCAAAGATCAATCTTTGCTGATCCGGAGGAATTCCTTCCTT 105237 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 |||||||||||| |||||| | || | |||| ||| ||| ||||| | || || Sbjct 105236 ATCTTGAATTTTTGCTTTGACGTTTTCGATCGTGTCCGAAGCCTCGACTTCCAATGTGAT 105177 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 ||||| || |||||||| || || || | ||||||| Sbjct 105176 GGTTTTTCCTGTGAGAGTTTTGACAAAAATCTGCATT 105140 Score = 111 bits (122), Expect = 4e-19 Identities = 150/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| |||||||| || || |||||||| ||||| || | || || | || ||||| | Sbjct 104891 CAAG-TGAAGAGTCGATTCCTTTTGGATATTGTAGTCAGACAAGGTACGTCCGTCTTCAA 104833 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| || || ||||| | | ||||||||| | | ||| ||||| || || |||| Sbjct 104832 GCTGTTTTCCAGCAAAGATCAAACGCTGCTGGTCAGGTGGGATGCCTTCTTTGTCCTGAA 104773 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | ||| ||| || |||| | |||| ||| ||| || |||||||| || || || | Sbjct 104772 TCTTTGCTTTCACGTTCTCGATAGTGTCAGAAGCCTCAACCTCAAGAGTTATGGTCTTTC 104713 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | ||||||||||| | |||||| Sbjct 104712 CAGTCAACGTCTTCACGAAAATCTGCAT 104685 Score = 98.7 bits (108), Expect = 2e-15 Identities = 152/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || | ||| | || || |||||||| ||||| ||||| | | || | || || Sbjct 105581 GAGAACTAAATGCAACGTTGATTCTTTTTGAATGTTATAATCTGAAAGCGTGCGGCCGTC 105522 Query 151952 TTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 ||||| ||||| ||||||||||| | ||||||||| |||| | |||||||||||| Sbjct 105521 CTCTAGCTGCTTT--CCGGCGAAGATCAACCTCTGCTGATCCGGTGGGATTCCTTCCTTA 105464 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 || |||||||| |||||| |||| | ||||||| || || || | || || Sbjct 105463 TCCTGAATTTTGGCTTTGACGTTCTCGATCGTGTCTGACGCTTCAACCTCCAATGTGATG 105404 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| | || || || || | ||||| Sbjct 105403 GTCTTTCCCGTCAATGTTTTAACAAAAATTTGCAT 105369 Score = 91.5 bits (100), Expect = 3e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || | ||| | || || ||||| || || ||||| || | | || | ||||| Sbjct 105809 GAGAACCAAATGCAAGGTTGATTCTTTCTGAATATTGTAGTCAGAAAGTGTACGACCATC 105750 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| || ||| ||||| ||||| | |||||| || || | | |||||||||||| || Sbjct 105749 TTCCAGCTGTTTTCCGGCAAAGATTAACCTCTGTTGATCTGGAGGGATTCCTTCCTTATC 105690 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 |||||||| ||||||| | || | |||| || ||| ||||| | ||||| || Sbjct 105689 CTGAATTTTGGCTTTGACATTTTCGATCGTGTCCGATGCCTCAACTTCCAATGTAATGGT 105630 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || | || || ||||| | ||||| Sbjct 105629 CTTTCCAGTCAATGTTTTAACGAAAATTTGCAT 105597 Score = 89.7 bits (98), Expect = 1e-12 Identities = 141/200 (71%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTCC 151965 || || || ||||| || || ||||| | | ||| | ||||| || || ||||| | Sbjct 105109 GTTGATTCCTTTTGAATATTATAATCTGAGAGAGTACGACCATCCTCAAGTTGCTTT--C 105052 Query 151966 CGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTT 152025 | || ||||| | |||||||| || | | ||| ||||| || ||||||||||| || Sbjct 105051 CAGCAAAGATCAATCTCTGCTGATCTGGTGGGATGCCTTCTTTATCTTGAATTTTCGCTT 104992 Query 152026 TGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAG 152085 ||||| |||| | | || ||| |||||| || | ||| || || || || || || | Sbjct 104991 TGACATTCTCAATCGTATCAGAAGCCTCTACCTCCAAAGTGATGGTCTTTCCAGTCAGGG 104932 Query 152086 TCTTCACGAAGACCTGCATT 152105 | || || || | ||||||| Sbjct 104931 TTTTAACAAAAATCTGCATT 104912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153641389519256