Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq9711 114 9e-21 seq7200 109 4e-19 seq10900 107 1e-18 seq6771 93.3 3e-14 >seq9711 Length=151070 Score = 114 bits (126), Expect = 9e-21 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | || ||||| || | || || ||| || || || ||||| ||||| Sbjct 104250 CATACCTCCACGAAGCCTCAAAACTAAATGCAGAGTGGATTCTTTCTGAATGTTATAATC 104191 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| |||| || |||||||| ||||| |||||||| | ||||||||| | Sbjct 104190 TGAAAGCGTGCGGCCGTCCTCTAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGG 104131 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | |||||||| ||| || || |||| | |||| | || ||||| | | || Sbjct 104130 TGGGATTCCTTCCTTATCCTGAATTTTG-GCTTTGACGTTCTCGATCGTGTCTGACGCTT 104072 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||||| || || ||||||||||| | ||| || ||||| |||||||| Sbjct 104071 CAACCTCCAATGTGATGGTCTTTCCCGTCAAGGTTTTGACGAAAATTTGCAT 104020 >seq7200 Length=105881 Score = 109 bits (120), Expect = 4e-19 Identities = 154/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTC 44187 |||| |||||| || ||||||||||| ||||| || | | || | || |||| || Sbjct 104893 ACCAAGTGAAGAGTCGATTCCTTTTGGATATTGTAGTCAGACAAGGTA-CGTCCGTCTTC 104835 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||| || || |||||||||||||||||||| || | || | ||||| || ||| Sbjct 104834 AAGCTGTTTTCCAGCAAAGATCAAACGCTGCTGGTCAGGTGGGATGCCTTCTTTGTCCTG 104775 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||||| | |||| | || ||||| | | || ||||| | || || |||| Sbjct 104774 AATCTT-TGCTTTCACGTTCTCGATAGTGTCAGAAGCCTCAACCTCAAGAGTTATGGTCT 104716 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| || | ||||||||||| || ||||| Sbjct 104715 TTCCAGTCAACGTCTTCACGAAAATCTGCAT 104685 Score = 105 bits (116), Expect = 5e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 || ||||| ||||| ||||| | || ||| |||| || |||||||| ||||| ||| Sbjct 105559 TCTTTTTGAATGTTATAATCTGAAAGCGTGCGGCCGTCCTCTAGCTGCTTTCCGGCGAAG 105500 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 ||||| | ||||||||| | || | |||||||| ||| || || |||| | ||| Sbjct 105499 ATCAACCTCTGCTGATCCGGTGGGATTCCTTCCTTATCCTGAATTTTG-GCTTTGACGTT 105441 Query 44267 C-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | | || ||||| | | ||| ||||||| || || ||||||||||| | || || || Sbjct 105440 CTCGATCGTGTCTGACGCTTCAACCTCCAATGTGATGGTCTTTCCCGTCAATGTTTTAAC 105381 Query 44326 GAAGATTTGCAT 44337 || |||||||| Sbjct 105380 AAAAATTTGCAT 105369 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 || ||||| ||||||||||| | ||| ||| |||| || || || || || |||||| Sbjct 105331 TCTTTTTGAATGTTGTAATCAGAAAGTGTGCGACCGTCCTCAAGTTGTTTGCCAGCAAAG 105272 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATG-T 44265 ||||| | |||||||| | ||| | |||||||| | | | | || ||||| | | | Sbjct 105271 ATCAATCTTTGCTGATCCGGAGGAATTCCTTCCTTAT-CTTGAATTTTTGCTTTGACGTT 105213 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | | || ||||| | | || || |||| || || || ||||| ||||| || || || Sbjct 105212 TTCGATCGTGTCCGAAGCCTCGACTTCCAATGTGATGGTTTTTCCTGTGAGAGTTTTGAC 105153 Query 44326 GAAGATTTGCAT 44337 || || ||||| Sbjct 105152 AAAAATCTGCAT 105141 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 || || || || ||||| || | ||| || | || |||||||| || ||||||||| Sbjct 105787 TCTTTCTGAATATTGTAGTCAGAAAGTGTACGACCATCTTCCAGCTGTTTTCCGGCAAAG 105728 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 || || | ||| ||||||| ||| | |||||||| ||| || || || | || Sbjct 105727 ATTAACCTCTGTTGATCTGGAGGGATTCCTTCCTTATCCTGAATTTTGGCTTTGACATTT 105668 Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326 | || ||||| | | || || |||| ||||| |||||||| || | || || ||| Sbjct 105667 TCGATCGTGTCCGATGCCTCAACTTCCAATGTAATGGTCTTTCCAGTCAATGTTTTAACG 105608 Query 44327 AAGATTTGCAT 44337 || |||||||| Sbjct 105607 AAAATTTGCAT 105597 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 |||||||| || || ||||| | ||| || | || || || ||||| || |||||| Sbjct 105103 TCCTTTTGAATATTATAATCTGAGAGAGTACGACCATCCTCAAGTTGCTTTCCAGCAAAG 105044 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 ||||| | ||||||||||| || | ||||| || || || ||| |||| | || Sbjct 105043 ATCAATCTCTGCTGATCTGGTGGGATGCCTTCTTTATCTTGAATTTTC-GCTTTGACATT 104985 Query 44267 C-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | | || || || | | || ||||||| || || |||||||| || ||||| || || Sbjct 104984 CTCAATCGTATCAGAAGCCTCTACCTCCAAAGTGATGGTCTTTCCAGTCAGGGTTTTAAC 104925 Query 44326 GAAGATTTGCAT 44337 || || ||||| Sbjct 104924 AAAAATCTGCAT 104913 >seq10900 Length=227893 Score = 107 bits (118), Expect = 1e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 44150 TTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATC 44209 ||||| ||||||||||| | || ||| | || || || || || || || ||||| Sbjct 197228 TTTTGAATGTTGTAATCTGAAAGGGTGCGTCCATCCTCTAGTTGTTTGCCAGCGAAGATG 197287 Query 44210 AAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-C 44268 | | ||||||||| | || | |||||||| ||| ||||| || | | |||| | Sbjct 197288 AGTCTCTGCTGATCCGGTGGAATTCCTTCCTTATCCTGAATCTT-AGCCTTGACGTTCTC 197346 Query 44269 TATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAA 44328 ||||| || | || |||||||| | || || ||||| |||||||||||||||||||| Sbjct 197347 GATGGTATCAGAGGCCTCCACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTCACGAA 197406 Query 44329 GATTTGCATGATG 44341 ||| |||||| || Sbjct 197407 GATCTGCATGGTG 197419 >seq6771 Length=7421 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC--GAGTTGGCGCTCGTCGT 44186 ||||| |||||||| ||||| |||||||| || |||| ||||| || | || | Sbjct 303 ACCAGATGAAGCGTAGATTCCTTCTGGATGTTATAGTCGGAAAGAGTTCT-GC-CATCTT 246 Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246 | || || || || ||||| || | |||||||||||||| ||| | ||||| || || Sbjct 245 CAAGTTGTTTGCCAGCAAAAATTAGACGCTGCTGATCTGGAGGAATGCCTTCTTTGTCTT 186 Query 44247 TTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 ||||| |||| | ||| |||| ||||| | | ||| || || | || || || Sbjct 185 GGATCTT-AGCTTTGACATTCTCTATAGTGTCTGAAGCTTCAACTTCGAGGGTGATAGTT 127 Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || ||||| || || |||||||| |||||| Sbjct 126 TTACCAGTGAGAGTTTTTACGAAGATCTGCATG 94 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359937154719912