Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22]
12,136 sequences; 257,976,923 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq6771 185 2e-41
seq9711 181 3e-40
seq7200 170 5e-37
seq10900 167 6e-36
>seq6771
Length=7421
Score = 185 bits (204), Expect = 2e-41
Identities = 170/215 (79%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| ||||||||||| || ||||| |||||||| || || ||| || ||
Sbjct 326 CAGATCTTCGTAAAAACTCTCACCGGTAAAACTATCACCCTTGAAGTTGAAGCTTCGGAT 385
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || |||||||| ||| || || ||||||||||| ||||| || ||||| || ||
Sbjct 386 ACTATAGAGAACGTGAAAGCTAAAATCCAGGACAAAGAGGGAATTCCCCCGGATCAACAG 445
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || || ||||| || |||||||| |||||||| ||||||||| | ||||| ||| ||
Sbjct 446 CGTCTAATTTTCGCTGGCAAACAGCTTGAAGATGGCAGGACTCTTTCAGATTACAACATC 505
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138
||||| ||||||||||| || | |||||| ||||
Sbjct 506 CAAAAGGAATCAACACTCCACTTAGTTTTGCGACT 540
Score = 181 bits (200), Expect = 3e-40
Identities = 166/210 (79%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| ||||||||||| || ||||| ||||||||||| || ||| ||||||
Sbjct 98 CAGATCTTCGTAAAAACTCTCACTGGTAAAACTATCACCCTCGAAGTTGAAGCTTCAGAC 157
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || ||||| |||||| ||||| || ||||||||||| || ||||| || |||||
Sbjct 158 ACTATAGAGAATGTCAAAGCTAAGATCCAAGACAAAGAAGGCATTCCTCCAGATCAGCAG 217
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || || || || || ||||| || |||||||| || |||||| |||| |||||| ||
Sbjct 218 CGTCTAATTTTTGCTGGCAAACAACTTGAAGATGGCAGAACTCTTTCCGACTATAACATC 277
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133
|| || ||||| || || ||||| ||| ||
Sbjct 278 CAGAAGGAATCTACGCTTCATCTGGTTCTG 307
>seq9711
Length=151070
Score = 181 bits (200), Expect = 3e-40
Identities = 169/215 (79%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||||||||| ||||| | || ||||| || ||||| | ||||| ||| ||||||
Sbjct 104023 CAAATTTTCGTCAAAACCTTGACGGGAAAGACCATCACATTGGAGGTTGAAGCGTCAGAC 104082
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||||||||||||| || |||||||| || ||||||||||| ||||| |||||
Sbjct 104083 ACGATCGAGAACGTCAAAGCCAAAATTCAGGATAAGGAAGGAATCCCACCGGATCAGCAG 104142
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
| | |||||||||||||| ||||| || || || | || ||| | ||||||||| |
Sbjct 104143 AGGTTGATCTTCGCCGGAAAGCAGCTAGAGGACGGCCGCACGCTTTCAGATTATAACATT 104202
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138
|| |||||||| || |||||| | |||||||| ||
Sbjct 104203 CAGAAAGAATCCACTCTGCATTTAGTTTTGAGGCT 104237
Score = 152 bits (168), Expect = 1e-31
Identities = 158/207 (76%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||| || ||||||||||| || ||||| || || | ||||| ||| || |||
Sbjct 103795 CAGATTTTTGTTAAAACTCTCACTGGCAAAACCATTACATTGGAGGTTGAAGCTTCGGAC 103854
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || |||||| || ||||| || || ||||||||||||||||| |||||
Sbjct 103855 ACAATTGAAAATGTCAAAGCCAAAATTCAAGATAAGGAAGGAATCCCTCCGGATCAGCAG 103914
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | |||||||| |||||||| || |||||||| | || ||| |||| || ||| |
Sbjct 103915 AGATTAATCTTCGCTGGAAAACAACTGGAAGATGGCCGTACACTTTCCGACTACAACATT 103974
Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130
|| |||||||| || ||||| | |||
Sbjct 103975 CAGAAAGAATCGACCTTGCATTTGGTT 104001
Score = 134 bits (148), Expect = 3e-26
Identities = 161/219 (74%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || || || ||| | || || ||||| || || || ||||| || || |||
Sbjct 104251 CAGATATTTGTCAAGACTTTAACTGGCAAAACTATAACACTAGAGGTCGAGGCTTCGGAC 104310
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||||||||| || || ||||| |||||||| || || ||||| || ||||||
Sbjct 104311 ACAATCGAGAACGTGAAGGCGAAAATTCAAGACAAAGAGGGCATTCCTCCCGATCAGCAA 104370
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|||| || ||||| || ||||| ||||| || ||| | ||| | |||| || || |
Sbjct 104371 AGACTGATTTTCGCTGGCAAACAACTCGAGGACGGACGAACTTTGTCCGACTACAATATT 104430
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
||||||||||| ||||| || ||||| | |||| |||
Sbjct 104431 CAAAAAGAATCCACACTCCACCTTGTACTTCGACTTAGA 104469
Score = 86.0 bits (94), Expect = 2e-11
Identities = 95/127 (75%), Gaps = 0/127 (0%)
Strand=Plus/Plus
Query 178012 AGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCG 178071
|||| || |||||||||||||| || || || | | ||||| |||||||||||||| |
Sbjct 103655 AGGATAAGGAAGGAATCCCTCCAGATCAACAGAGGTTAATCTTTGCCGGAAAACAGCTGG 103714
Query 178072 AAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTT 178131
||||||| | || ||| | || || ||| | || ||||| || || | ||| | || |
Sbjct 103715 AAGATGGTCGTACACTTTCAGACTACAACATTCAGAAAGAGTCTACGTTACATTTGGTCT 103774
Query 178132 TGAGACT 178138
|||| ||
Sbjct 103775 TGAGGCT 103781
>seq7200
Length=105881
Score = 170 bits (188), Expect = 5e-37
Identities = 162/207 (78%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||| || ||||| | || ||||| || ||||| | ||||| ||| ||||||
Sbjct 105372 CAAATTTTTGTTAAAACATTGACGGGAAAGACCATCACATTGGAGGTTGAAGCGTCAGAC 105431
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||||||||||||| || |||||||| || ||||||||||| ||||| |||||
Sbjct 105432 ACGATCGAGAACGTCAAAGCCAAAATTCAGGATAAGGAAGGAATCCCACCGGATCAGCAG 105491
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
| | |||||||||||||| ||||| || || || | || ||| | ||||||||| |
Sbjct 105492 AGGTTGATCTTCGCCGGAAAGCAGCTAGAGGACGGCCGCACGCTTTCAGATTATAACATT 105551
Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130
|||||||||||||| ||||| | |||
Sbjct 105552 CAAAAAGAATCAACGTTGCATTTAGTT 105578
Score = 161 bits (178), Expect = 2e-34
Identities = 160/207 (77%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||| || |||||||||||||||||||| ||||| | || || || || |||
Sbjct 105144 CAGATTTTTGTCAAAACTCTCACAGGAAAAACCATCACATTGGAAGTCGAGGCTTCGGAC 105203
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| ||||||||| ||| ||||| || || |||||||| |||||||| ||||||
Sbjct 105204 ACGATCGAAAACGTCAAAGCAAAAATTCAAGATAAGGAAGGAATTCCTCCGGATCAGCAA 105263
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | ||||| || || ||||| || || || || | || ||| | ||||| ||| |
Sbjct 105264 AGATTGATCTTTGCTGGCAAACAACTTGAGGACGGTCGCACACTTTCTGATTACAACATT 105323
Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130
|||||||||||||| ||||| | |||
Sbjct 105324 CAAAAAGAATCAACGTTGCATTTAGTT 105350
Score = 154 bits (170), Expect = 4e-32
Identities = 162/209 (78%), Gaps = 3/209 (1%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||||||||| || | || ||||| || || || || ||||| || || |||
Sbjct 104688 CAGATTTTCGTGAAGACGTTGACTGGAAAGACCATAACTCTTGAGGTTGAGGCTTCTGAC 104747
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||||||||| ||| ||||||||||||||||||||| ||||| || ||||||||
Sbjct 104748 ACTATCGAGAACGTGAAAGCAAAGATTCAGGACAAAGAAGGCATCCCACCTGACCAGCAG 104807
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102
|| | ||||| || ||||||||||| ||||| ||| | || |||| | || || || |
Sbjct 104808 CGTTTGATCTTTGCTGGAAAACAGCTTGAAGACGGACGTAC-CTTGTCTGACTACAATAT 104866
Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTT 178131
|||||| ||||| || || || |||| ||
Sbjct 104867 CCAAAAGGAATCGACTCTTCA-CTTGGTT 104894
Score = 134 bits (148), Expect = 3e-26
Identities = 154/207 (74%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||||||||| ||||| | || ||||| || || || | || || || || |||
Sbjct 105600 CAAATTTTCGTTAAAACATTGACTGGAAAGACCATTACATTGGAAGTTGAGGCATCGGAC 105659
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| || |||||| || |||||||| || |||||||||||||| || || ||
Sbjct 105660 ACGATCGAAAATGTCAAAGCCAAAATTCAGGATAAGGAAGGAATCCCTCCAGATCAACAG 105719
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
| | ||||| |||||||||||||| |||||||| | || ||| | || || || |
Sbjct 105720 AGGTTAATCTTTGCCGGAAAACAGCTGGAAGATGGTCGTACACTTTCTGACTACAATATT 105779
Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130
|| ||||||||||| ||||| | |||
Sbjct 105780 CAGAAAGAATCAACCTTGCATTTGGTT 105806
>seq10900
Length=227893
Score = 167 bits (184), Expect = 6e-36
Identities = 149/187 (80%), Gaps = 0/187 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || |||||||| || ||||| || || || ||||||||||||||||| ||| ||
Sbjct 197412 CAGATCTTCGTGAAGACCCTCACGGGTAAGACCATCACCCTCGAGGTGGAGGCCTCTGAT 197353
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||||||||||||||| ||||||||||| || |||||||| || ||||| |||||
Sbjct 197352 ACCATCGAGAACGTCAAGGCTAAGATTCAGGATAAGGAAGGAATTCCACCGGATCAGCAG 197293
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|||| |||||||| || ||||| || || |||||| | || ||| | ||||| ||| |
Sbjct 197292 AGACTCATCTTCGCTGGCAAACAACTAGAGGATGGACGCACCCTTTCAGATTACAACATT 197233
Query 178104 CAAAAAG 178110
|||||||
Sbjct 197232 CAAAAAG 197226
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203544028826384
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