Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq6771 185 2e-41 seq9711 181 3e-40 seq7200 170 5e-37 seq10900 167 6e-36 >seq6771 Length=7421 Score = 185 bits (204), Expect = 2e-41 Identities = 170/215 (79%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| ||||||||||| || ||||| |||||||| || || ||| || || Sbjct 326 CAGATCTTCGTAAAAACTCTCACCGGTAAAACTATCACCCTTGAAGTTGAAGCTTCGGAT 385 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||| ||| || || ||||||||||| ||||| || ||||| || || Sbjct 386 ACTATAGAGAACGTGAAAGCTAAAATCCAGGACAAAGAGGGAATTCCCCCGGATCAACAG 445 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| || |||||||| |||||||| ||||||||| | ||||| ||| || Sbjct 446 CGTCTAATTTTCGCTGGCAAACAGCTTGAAGATGGCAGGACTCTTTCAGATTACAACATC 505 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| ||||||||||| || | |||||| |||| Sbjct 506 CAAAAGGAATCAACACTCCACTTAGTTTTGCGACT 540 Score = 181 bits (200), Expect = 3e-40 Identities = 166/210 (79%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| ||||||||||| || ||||| ||||||||||| || ||| |||||| Sbjct 98 CAGATCTTCGTAAAAACTCTCACTGGTAAAACTATCACCCTCGAAGTTGAAGCTTCAGAC 157 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| |||||| ||||| || ||||||||||| || ||||| || ||||| Sbjct 158 ACTATAGAGAATGTCAAAGCTAAGATCCAAGACAAAGAAGGCATTCCTCCAGATCAGCAG 217 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || || || || ||||| || |||||||| || |||||| |||| |||||| || Sbjct 218 CGTCTAATTTTTGCTGGCAAACAACTTGAAGATGGCAGAACTCTTTCCGACTATAACATC 277 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || || ||||| || || ||||| ||| || Sbjct 278 CAGAAGGAATCTACGCTTCATCTGGTTCTG 307 >seq9711 Length=151070 Score = 181 bits (200), Expect = 3e-40 Identities = 169/215 (79%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| | || ||||| || ||||| | ||||| ||| |||||| Sbjct 104023 CAAATTTTCGTCAAAACCTTGACGGGAAAGACCATCACATTGGAGGTTGAAGCGTCAGAC 104082 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||||||||||| || |||||||| || ||||||||||| ||||| ||||| Sbjct 104083 ACGATCGAGAACGTCAAAGCCAAAATTCAGGATAAGGAAGGAATCCCACCGGATCAGCAG 104142 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | |||||||||||||| ||||| || || || | || ||| | ||||||||| | Sbjct 104143 AGGTTGATCTTCGCCGGAAAGCAGCTAGAGGACGGCCGCACGCTTTCAGATTATAACATT 104202 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || |||||||| || |||||| | |||||||| || Sbjct 104203 CAGAAAGAATCCACTCTGCATTTAGTTTTGAGGCT 104237 Score = 152 bits (168), Expect = 1e-31 Identities = 158/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || ||||||||||| || ||||| || || | ||||| ||| || ||| Sbjct 103795 CAGATTTTTGTTAAAACTCTCACTGGCAAAACCATTACATTGGAGGTTGAAGCTTCGGAC 103854 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || |||||| || ||||| || || ||||||||||||||||| ||||| Sbjct 103855 ACAATTGAAAATGTCAAAGCCAAAATTCAAGATAAGGAAGGAATCCCTCCGGATCAGCAG 103914 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| |||||||| || |||||||| | || ||| |||| || ||| | Sbjct 103915 AGATTAATCTTCGCTGGAAAACAACTGGAAGATGGCCGTACACTTTCCGACTACAACATT 103974 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || |||||||| || ||||| | ||| Sbjct 103975 CAGAAAGAATCGACCTTGCATTTGGTT 104001 Score = 134 bits (148), Expect = 3e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||| | || || ||||| || || || ||||| || || ||| Sbjct 104251 CAGATATTTGTCAAGACTTTAACTGGCAAAACTATAACACTAGAGGTCGAGGCTTCGGAC 104310 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||||||| || || ||||| |||||||| || || ||||| || |||||| Sbjct 104311 ACAATCGAGAACGTGAAGGCGAAAATTCAAGACAAAGAGGGCATTCCTCCCGATCAGCAA 104370 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| || ||||| || ||||| ||||| || ||| | ||| | |||| || || | Sbjct 104371 AGACTGATTTTCGCTGGCAAACAACTCGAGGACGGACGAACTTTGTCCGACTACAATATT 104430 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||||||||| ||||| || ||||| | |||| ||| Sbjct 104431 CAAAAAGAATCCACACTCCACCTTGTACTTCGACTTAGA 104469 Score = 86.0 bits (94), Expect = 2e-11 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 178012 AGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCG 178071 |||| || |||||||||||||| || || || | | ||||| |||||||||||||| | Sbjct 103655 AGGATAAGGAAGGAATCCCTCCAGATCAACAGAGGTTAATCTTTGCCGGAAAACAGCTGG 103714 Query 178072 AAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTT 178131 ||||||| | || ||| | || || ||| | || ||||| || || | ||| | || | Sbjct 103715 AAGATGGTCGTACACTTTCAGACTACAACATTCAGAAAGAGTCTACGTTACATTTGGTCT 103774 Query 178132 TGAGACT 178138 |||| || Sbjct 103775 TGAGGCT 103781 >seq7200 Length=105881 Score = 170 bits (188), Expect = 5e-37 Identities = 162/207 (78%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||| | || ||||| || ||||| | ||||| ||| |||||| Sbjct 105372 CAAATTTTTGTTAAAACATTGACGGGAAAGACCATCACATTGGAGGTTGAAGCGTCAGAC 105431 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||||||||||| || |||||||| || ||||||||||| ||||| ||||| Sbjct 105432 ACGATCGAGAACGTCAAAGCCAAAATTCAGGATAAGGAAGGAATCCCACCGGATCAGCAG 105491 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | |||||||||||||| ||||| || || || | || ||| | ||||||||| | Sbjct 105492 AGGTTGATCTTCGCCGGAAAGCAGCTAGAGGACGGCCGCACGCTTTCAGATTATAACATT 105551 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 |||||||||||||| ||||| | ||| Sbjct 105552 CAAAAAGAATCAACGTTGCATTTAGTT 105578 Score = 161 bits (178), Expect = 2e-34 Identities = 160/207 (77%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || |||||||||||||||||||| ||||| | || || || || ||| Sbjct 105144 CAGATTTTTGTCAAAACTCTCACAGGAAAAACCATCACATTGGAAGTCGAGGCTTCGGAC 105203 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||||||| ||| ||||| || || |||||||| |||||||| |||||| Sbjct 105204 ACGATCGAAAACGTCAAAGCAAAAATTCAAGATAAGGAAGGAATTCCTCCGGATCAGCAA 105263 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || ||||| || || || || | || ||| | ||||| ||| | Sbjct 105264 AGATTGATCTTTGCTGGCAAACAACTTGAGGACGGTCGCACACTTTCTGATTACAACATT 105323 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 |||||||||||||| ||||| | ||| Sbjct 105324 CAAAAAGAATCAACGTTGCATTTAGTT 105350 Score = 154 bits (170), Expect = 4e-32 Identities = 162/209 (78%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || | || ||||| || || || || ||||| || || ||| Sbjct 104688 CAGATTTTCGTGAAGACGTTGACTGGAAAGACCATAACTCTTGAGGTTGAGGCTTCTGAC 104747 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||||||| ||| ||||||||||||||||||||| ||||| || |||||||| Sbjct 104748 ACTATCGAGAACGTGAAAGCAAAGATTCAGGACAAAGAAGGCATCCCACCTGACCAGCAG 104807 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | ||||| || ||||||||||| ||||| ||| | || |||| | || || || | Sbjct 104808 CGTTTGATCTTTGCTGGAAAACAGCTTGAAGACGGACGTAC-CTTGTCTGACTACAATAT 104866 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTT 178131 |||||| ||||| || || || |||| || Sbjct 104867 CCAAAAGGAATCGACTCTTCA-CTTGGTT 104894 Score = 134 bits (148), Expect = 3e-26 Identities = 154/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| | || ||||| || || || | || || || || ||| Sbjct 105600 CAAATTTTCGTTAAAACATTGACTGGAAAGACCATTACATTGGAAGTTGAGGCATCGGAC 105659 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || |||||| || |||||||| || |||||||||||||| || || || Sbjct 105660 ACGATCGAAAATGTCAAAGCCAAAATTCAGGATAAGGAAGGAATCCCTCCAGATCAACAG 105719 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | ||||| |||||||||||||| |||||||| | || ||| | || || || | Sbjct 105720 AGGTTAATCTTTGCCGGAAAACAGCTGGAAGATGGTCGTACACTTTCTGACTACAATATT 105779 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || ||||||||||| ||||| | ||| Sbjct 105780 CAGAAAGAATCAACCTTGCATTTGGTT 105806 >seq10900 Length=227893 Score = 167 bits (184), Expect = 6e-36 Identities = 149/187 (80%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || ||||| || || || ||||||||||||||||| ||| || Sbjct 197412 CAGATCTTCGTGAAGACCCTCACGGGTAAGACCATCACCCTCGAGGTGGAGGCCTCTGAT 197353 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||||||||| ||||||||||| || |||||||| || ||||| ||||| Sbjct 197352 ACCATCGAGAACGTCAAGGCTAAGATTCAGGATAAGGAAGGAATTCCACCGGATCAGCAG 197293 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| |||||||| || ||||| || || |||||| | || ||| | ||||| ||| | Sbjct 197292 AGACTCATCTTCGCTGGCAAACAACTAGAGGATGGACGCACCCTTTCAGATTACAACATT 197233 Query 178104 CAAAAAG 178110 ||||||| Sbjct 197232 CAAAAAG 197226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203544028826384