Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq10162 192 6e-44 >seq10162 Length=1180275 Score = 192 bits (212), Expect = 6e-44 Identities = 471/705 (67%), Gaps = 8/705 (1%) Strand=Plus/Plus Query 16798 ATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTAC 16857 ||| || |||||||| ||||||| |||||||||| || |||||||| || | | ||| Sbjct 71462 ATCGGCAACAAATTCAATATATTCCGACATTAATTCACAATTCATTCCAATTAAAT-TAC 71520 Query 16858 C-GGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAG 16916 || |||||||| || | ||| || || || || || || || || | Sbjct 71521 ATGGCAGAGCTTCAGTTAGGAATTCCTGTTCAATTTTTACAGCATCTCGGATGATTTCAA 71580 Query 16917 CAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGC 16976 || ||||| | | ||| | || |||| ||| |||||||| || ||||| | Sbjct 71581 TAATACGTTCTTTGCTGGGTTTCTGCACCAGATATTTGAACATCAGTACGGCAAAATCAC 71640 Query 16977 AATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTC 17036 |||| || || ||||| | ||| | ||| || || |||||||| || ||||| | Sbjct 71641 AATGCAAGCCTTCGTCACGCGAGATCAATTCATTGGAGAATGTCAAGCCAGGCATTAGAC 71700 Query 17037 CTCGTTTCTTTAACCAAAATATCGCGGCGAA-CGACC-CAGAAAAGAATATACCCTCGAC 17094 | |||||||| | |||||| || | ||| || | ||| | ||||| |||||||||| || Sbjct 71701 CACGTTTCTTAAGCCAAAAGATGGAGGCAAAACTACCGCTGAAAA--ATATACCCTCAAC 71758 Query 17095 GGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAA-TCCATTTCT 17153 || |||||||| || | ||||| | | | || || | | ||| ||||| | Sbjct 71759 GGCAGCAAACGCAATAACACGTTCTCCAAAATTAGCCGATTC-TGATGAAATCCATGACA 71817 Query 17154 GCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTCT 17213 |||| ||||| || | ||| | | ||| ||||| ||||| || || | | | Sbjct 71818 AGGCCCAATCGGCCTTCTTCTTAACGGCTGGCATTGTTTCAATGGCATTGAAAAGATATT 71877 Query 17214 CTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTA 17273 | || | |||| | || || |||||||| || | || |||||||||||||| | Sbjct 71878 CACGTTGATCGCGGTCCTTAATGTATGTATCGATCAGAATACTATACATTTCGGAGTGAA 71937 Query 17274 TGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCA 17333 || |||||||| || || || || || ||||| |||||||| | | ||| || || Sbjct 71938 CATTTTCCATGGCAATTTGGAAGCCATAGAAGCAACGGGCTTCTGTCACTTGCACCTCTT 71997 Query 17334 CGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCA 17393 |||| ||||| ||| |||||| || || || || || ||||||||||| |||| Sbjct 71998 GCGAGAAACGTTCAACTAAATTTTCATTGACAATACCATCAGAGGCGGCGAAAAAGGCCA 72057 Query 17394 ATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTT 17453 | ||| |||||||| ||| | ||| | ||| || |||| |||| Sbjct 72058 GAACATGAGATATGAAATAGCGTTCATTGTCTGTTAATCTATCCCAATCAGTTAAGTCTT 72117 Query 17454 TGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCT 17498 |||| | ||| |||||||| |||||||| |||| |||||| Sbjct 72118 TGGAGAGATCAACTTCTTCCACTGTCCAAAATGAAGCCTCTGCCT 72162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517413063041160