Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq10162 159 4e-34 >seq10162 Length=1180275 Score = 159 bits (176), Expect = 4e-34 Identities = 471/711 (66%), Gaps = 20/711 (3%) Strand=Plus/Plus Query 16036 ATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTAT-AAGTCGTA 16094 ||| || |||||||| ||||||| ||||||| || ||||| ||||| || || | || Sbjct 71462 ATCGGCAACAAATTCAATATATTCCGACATTAATTCACAATTCATTCCAATTAAAT--TA 71519 Query 16095 CC-GGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCG 16153 | || ||||||| |||| |||| ||||| || || || ||| ||||| || Sbjct 71520 CATGGCAGAGCTTCAGTTAGGAATTCCTGTTCAATTTTTACAGCATCTCGGATGATTTCA 71579 Query 16154 GTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCG 16213 | ||| || ||| | || || | ||| ||||| || || || || Sbjct 71580 ATAATACGTTCTTTGCTGGGTTTCTGCACCAGATATTTGAACATCAGTACGGCAAAATCA 71639 Query 16214 CAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTT 16273 ||||| | |||||||| | ||| | ||| ||||| || || || || |||||| Sbjct 71640 CAATGCAAGCCTTCGTCACGCGAGATCAATTCATTGGAGAATGTCAAGCCAGGCATTAGA 71699 Query 16274 CCTCGTTTCTTTAACCAGAATATCGCAGCAAATG-ACCCCGAAAAGAATATACCCTCAAC 16332 || |||||||| | ||| || || | ||||| ||| | ||| |||||||||||||| Sbjct 71700 CCACGTTTCTTAAGCCAAAAGATGGAGGCAAAACTACCGCTGAAA-AATATACCCTCAAC 71758 Query 16333 AGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGC--ATCTTTATTACGAATCCATTTC 16390 | ||||| || || | ||||| | | |||| || | || | ||||||| | Sbjct 71759 GGCAGCAAACGCAATAACACGTTCTCCAAAATTAGCCGATTCTGATGA--AATCCATGAC 71816 Query 16391 TGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACA-AT-T 16448 |||| ||||| || | || | ||| ||||| ||||| || || | || | Sbjct 71817 AAGGCCCAATCGGCCTTCTTCTTAACGGCTGGCATTGTTTCAATGGCATTGAAAAGATAT 71876 Query 16449 TCTCTTTT-TCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAG 16507 || | || || | || | || || ||||| ||||| | ||| |||||||| ||| Sbjct 71877 TCACGTTGATCGCGG---TCCTTAATGTATGTATCGATCAGAATACTATACATTTCGGAG 71933 Query 16508 TGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACT 16567 || | || || ||||| || || || ||||||||||| || || || | | ||| || Sbjct 71934 TGAACATTTTCCATGGCAATTTGGAAGCCATAGAAGCAACGGGCTTCTGTCACTTGCACC 71993 Query 16568 TCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAAC 16627 || | || ||||| | | || ||||| || ||||| ||| || || ||||| Sbjct 71994 TCTTGCGAGAAACGTTCAACTAAATTTTCATTGACAATACCATCAGAGGCGGCGAAAAAG 72053 Query 16628 GCC--AATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTA 16685 ||| || ||| | | |||||||| ||| | ||| | ||| |||||| ||| Sbjct 72054 GCCAGAACATGAGAT--ATGAAATAGCGTTCATTGTCTGTTAATCTATCCCAATCAGTTA 72111 Query 16686 AATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCT 16736 | |||||||| | ||| |||||||| |||||||| |||| |||||| Sbjct 72112 AGTCTTTGGAGAGATCAACTTCTTCCACTGTCCAAAATGAAGCCTCTGCCT 72162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511283433164840