Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq10186 558 4e-154 seq10162 354 1e-92 >seq10186 Length=270785 Score = 558 bits (618), Expect = 4e-154 Identities = 1500/2272 (66%), Gaps = 40/2272 (2%) Strand=Plus/Plus Query 52802 TCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTT 52861 |||| || || ||||||| | || || || || || |||| ||| ||||| ||||| Sbjct 27528 TCCACCGTAAACTGAATGGCATTGGCCGCAGGCTTTGTTCGTAAATAATACATGCCCGTC 27587 Query 52862 TTTAGACCGAGACT-CCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATC 52920 || || || || || ||| || ||||| || || | ||| ||| | || || Sbjct 27588 TTGAGGCC-AGCCTTCCAGGAATAGAAATGTATGGAAGTCAATTTTCCGTAATTGGGTTC 27646 Query 52921 TGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCAT 52980 |||| || ||||| | |||||||| |||||||||||||| || | || || ||||| Sbjct 27647 GGCTACGTGTATATTAAACGATTGACTCTGATCGATGAAGGCCCCACGATCGGCGGCCAT 27706 Query 52981 TTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATATCTT 53039 ||| ||| | ||||| | ||||||||||| ||||| |||| ||| | | | |||| Sbjct 27707 TTTGATGGTTGTCTTGACGGAAATTTCCCAAACGGTTTTGTAAAGCTCTCGGA-TCTCTT 27765 Query 53040 CTGGAAGGTTTG---TATTCTGAATAGATCCACCATCTACCA-TAATCCTATTCTTGATC 53095 |||| | | |||| || ||||| |||| ||| | | ||| ||||||| || Sbjct 27766 TGGGAATCTGTTCAATATTTTGTATAGAGCCACGG-CTAGAAATGATCTTATTCTTCATA 27824 Query 53096 TCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGA 53155 || |||| ||| || | ||||| ||| | | || | ||| |||| || | | | Sbjct 27825 TCTTCATCCCACAAATCAAGTTCGGTCAAATCCTTGAGCAAATGGTGATTGACAATATTA 27884 Query 53156 AATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCA 53215 ||||| || || | ||| | || ||||||||||| || || || || | || ||| Sbjct 27885 AATTCACCTGAGAGTACACGACGTGTGTAAATATTCGATGTGTAGGGCTCAAATGATTCA 27944 Query 53216 TTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTT 53275 ||||| |||| ||| || || || || ||||| ||||| ||||| | | || || Sbjct 27945 TTATTACCCATAATCTGGGCTGTAGAAGCAGTAGGCATTGGTGCTAAGAGCAATGAGTTG 28004 Query 53276 CTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACG 53333 | | ||| ||| | | ||||| | ||||| |||||| ||| | || | | Sbjct 28005 CGCACACC--ATGCTTGGCAATTTTGGCCTTTAGGTCAGCCCAATCCCACAAGTCGGTGG 28062 Query 53334 GTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTAC----A 53389 |||| || |||||||| || || ||| |||| | Sbjct 28063 GTACTTTATTCCACATATCATACTGAAGAATACCTTTGCT----TACAGGGCTACCGGGA 28118 Query 53390 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 53449 ||||| || || || || || |||||||| ||||||||||| ||||| || ||||| || Sbjct 28119 TATGTTTCATAGGGACCATCTTTCTCAGCCAGTTCACAACTGGCCTCCAAGGCACCATAG 28178 Query 53450 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGT--GCTTCCAGGCTATCAAATGGAT 53507 ||||| |||||||| || | || ||| || ||||| || | || ||| | || | Sbjct 28179 TAAATTGTTTCGAAAATTTGCTGATTAAG--CTTGTAGGCCTGTTCACTTTCATAGGGGT 28236 Query 53508 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 53567 || | ||||| | | ||| || || ||||| ||||||||||| || || | ||||| Sbjct 28237 AACGCATCAGAATTAGGGTGTCAGCGAAACCTTGTACACCAATACCAATGGGACGATGTC 28296 Query 53568 TCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGA 53627 || |||| || || ||||| || | ||||| || || || || || |||||||||| Sbjct 28297 TCATATTGGACTTTCTTGCTTCCGGCAATGGATAGTAGTTGATGTCAATGATTTTATTGA 28356 Query 53628 GGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCAT-CT 53686 | || | || || ||| |||||| ||||| ||| |||||| | ||| | || Sbjct 28357 GATTGCGCGTAACAACCTTGGCCACATTCTTCAATTTCTTGAAATCATAC-GTCTTTTCT 28415 Query 53687 A---TTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCA 53743 | |||||||| || | ||| || |||| ||||||||| || | |||| || Sbjct 28416 GGAGTCACAAACATATTGAGACAAATCGAGGCCAAATTACAAACTGCAATTTCATCAGGT 28475 Query 53744 TCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGT 53803 ||| || | | || || || || | ||| || || ||||| || || | ||||||| Sbjct 28476 GCCGAGTACTCAACAATTTCTGTACACAAATTGCTGCATTTGATCGTGCCAATATTTTGT 28535 Query 53804 TGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATC 53863 ||||||||||| || || || || || | || || | || || || ||||| | Sbjct 28536 TGATTACTCTTGCGATTGCAAGCGTCTTTGAACAGCATATAAGGGGTTCCTGTTTCCACT 28595 Query 53864 TGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTTT 53923 |||| ||| || || || ||| | | | || |||| | ||| | | | Sbjct 28596 TGGGCTTCGATGATGGCAAACCATAGCGCCTGCGCTTTTACGGTCCTATTGGCTTTGCCT 28655 Query 53924 TCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCA 53983 || |||||||| | || | | |||||| ||||||||||| |||| | | || Sbjct 28656 TCCTTTTCGTATTTTTCGTAAAGTTTTTCAAATTCGTCTCCCCACACATCTTGTAGCCCC 28715 Query 53984 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 54043 ||||||| | |||||||| | |||||| || || | || | || || |||||||| Sbjct 28716 GGACATTTGTGTGGACACATTAGCGACCAGTCGCCATTCTCTTCGACACGCTTCATAAAC 28775 Query 54044 AGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGT 54102 ||||| ||||||||||| || || ||| |||||||||| | ||| || || || ||||| Sbjct 28776 AGATCGGGAATCCAAAGGGCGTAGAAA-AGATCTCTGGCACGATGCTCTTCCTTGCCTGT 28834 Query 54103 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGT 54162 || || || | ||| | ||| | | |||||| |||||||| |||||||| || |||| Sbjct 28835 GTTTTTCTTTAAATCCAAAAACTCAAAAATATCCGAATGCCATGGTTCCAAATAGATGGC 28894 Query 54163 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 54222 | | ||||| |||||| || || ||||| | || | || || || | || Sbjct 28895 AAATGCGCCAGGACGTTTGCCGCCACCTTGATCGACATAACGTGCAACATTGTTGAATAC 28954 Query 54223 TCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACT 54282 || ||||| || | | ||||||||||| ||||| || |||| ||| | |||| | Sbjct 28955 CCTTAACATGGGCACTAAACCATTGGATGTGCCATTAGTGCCGGCAATAGAAGTTCCCTT 29014 Query 54283 GGCACGAAT--ATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCG 54340 ||| || || | | |||||| || || || || ||| ||| || || | ||| Sbjct 29015 GGCGCGTATACAATGGACATTGAT--GCCAATTCCTCCGGCCGATTTCGATATCATGGCG 29072 Query 54341 CATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAA 54400 || ||| | | | | || || || || |||| ||| |||| | || || ||| Sbjct 29073 CACTGTTCAACAGACTTGAAAATACCTTCAATCGAATCAGCCACCATGGTCAGGAGGAAA 29132 Query 54401 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 54460 || |||| ||| | || | || | ||| ||||| || |||||||| || ||| Sbjct 29133 CAAGACGACAGCTGGGGGAGATTGGTGGCAGCAGCAAATAGAGTTGGAGAAGCATGAGTA 29192 Query 54461 AACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGA 54520 || | ||| ||||| | ||||| |||||||| || | || || || ||| Sbjct 29193 AAGTAACGTTCCGAAAGCAAGTTGTAAGTCTCGATGGCAGCATCAATGTCTTCACCATGT 29252 Query 54521 ATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATT 54580 || || || || |||||||| | |||||| ||||| || || | ||||| || ||| Sbjct 29253 ATGCCCACAGCCACACGCATGAGCATGTGTTGAGGCCTCTCCGCAATCTTTCCATTCATT 29312 Query 54581 TTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGT 54640 |||| ||| || || ||||||| |||||||| |||||||| ||||| || || || Sbjct 29313 TTCAACAAATACGACCTTTCCAATGTTTTAAATCCAAAATAATTGTAACCGAAATCACGA 29372 Query 54641 TCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATA 54700 || |||| ||| | || ||||| ||| || || | || |||| || | | | Sbjct 29373 TCATAAACAATGGCCGAATTGAGGCGCTCCGAATTCTTCATTACCACAT-TATAATGAAA 29431 Query 54701 CT-TGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATAAATCCTT 54759 || || || || || | || | || ||| | | | ||| | | ||||| | Sbjct 29432 CTCCGATATCATGGGTGCCGGTCTGCCCGTTTCATCGCTAATATAATGATGCAAATCACT 29491 Query 54760 CATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGC 54819 ||||| || || | || || ||||| || || ||||| ||||| || || | || Sbjct 29492 GATCACCTCGGAGAACACCTTCTTCGTTTCCTTATGAAGATTCGATACAGCAATACGGGC 29551 Query 54820 GGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAG 54879 || || | |||||||| | ||| | || || ||| || || |||| |||| || Sbjct 29552 TGCCAGCAAAGCATAATCAGCATGATTAGTTGTTAGAGTAGCAGCCGTTTCCGCTGCCAA 29611 Query 54880 AGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTAT 54939 | | ||||||| | || || || ||| ||| | || | || ||| | | | ||| Sbjct 29612 ATTATCCAATTGTTGTGTGGTCACACCACAATACAAGCCATTAATGACCCTTAAGGTTAT 29671 Query 54940 TTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGATGT 54999 || |||||| | | ||| | || |||||||| || | ||| || |||||||| Sbjct 29672 GGCAACAGGATCGACAAAATCCATATTCAAGCCATAGCAAAGCTTTTGGATGCGAGATGT 29731 Query 55000 GATTTTATCAAACATG-ACATTTTCCTTGTATCCATTTCGTTTAATGACAAA 55050 ||| || || || ||| || | ||||||| |||| ||| |||| ||||| Sbjct 29732 GATCTTGTCGAA-ATGTACCTCTTCCTTGCGACCATCTCGCTTAACCACAAA 29782 >seq10162 Length=1180275 Score = 354 bits (392), Expect = 1e-92 Identities = 589/843 (70%), Gaps = 26/843 (3%) Strand=Plus/Plus Query 23838 CCCATTTTTTGGTATTCACCCACACGTTT---TTCGAAAAAATTAGTTTTACCTTCTAAT 23894 ||||||||| ||||||||||||| ||| ||| || ||||| |||||||| || ||| Sbjct 71332 CCCATTTTT-GGTATTCACCCAC---TTTGCGTTCAAAGAAATTTGTTTTACCATCCAAT 71387 Query 23895 GATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAAT 23954 || || |||||||||| | | ||||| | ||| |||||| | || ||||| Sbjct 71388 GAAATCATTTCCATGAAGGGGAAAGGATTTTTGGTATTGTAGATTTTGCCAACATCCAAT 71447 Query 23955 TCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATT 24014 ||| | || | ||| || ||||| || |||||| ||| | ||||||||||||| Sbjct 71448 TCAACCAGCAGACGATCGGCAACAAATTCAATATATTCCGACATTAATTCACAATTCATT 71507 Query 24015 CCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCT 24074 || || | ||| ||| ||||| |||| || ||||| |||||||| || || ||| Sbjct 71508 CCAATTAAATTACATGGCAGAGCTTCAGTTAGGAATTCCTGTTCAATTTTTACAGCATCT 71567 Query 24075 GTTATAATAG--ATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCA 24132 || || || ||| ||||| || ||| | || | || ||| ||||||| Sbjct 71568 CGGATGATTTCAATAATACG--TTCTTTGCTGGGTTTCTGCACCAGATATTTGAACATCA 71625 Query 24133 AACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGA 24192 || ||||| || || | || ||||| | || ||||| ||||| || || | Sbjct 71626 GTACGGCAAAATCACAATGCAAGCCTTCGTCACGCGAGATCAATTCATTGGAGAATGTCA 71685 Query 24193 GTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGA 24252 || |||||||| ||||| || ||||||||||| ||||| ||||| || || | Sbjct 71686 AGCCAGGCATTAGACCACGTTTCTTAAGCCAAAAGATGGAGGCAAAACTACCGCTGAAAA 71745 Query 24253 AAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAA----CCGGCGCTGTCA 24308 | || || || || || ||||| ||||||| | ||||||| || ||| ||| | Sbjct 71746 ATATACCCTCAACGGCAGCAAACGCAATAACACGTTCTCCAAAATTAGCCGATTCTG--A 71803 Query 24309 TGTA-TCCACTTTTGA----GCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 24363 || | |||| ||| ||||||||||||||||| || || |||||||| || | Sbjct 71804 TGAAATCCA----TGACAAGGCCCAATCGGCCTTCTTCTTAACGGCTGGCATTGTTTCAA 71859 Query 24364 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 24423 | ||||| || ||||| | || || | || |||| |||||||| |||| || || Sbjct 71860 TGGCATTGAAAAGATATTCACGTTGATCGCGGTCCTTAATGTATGTATCGATCAGAATAC 71919 Query 24424 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCT 24483 |||||||||| || |||| ||||| ||||| ||||| || || ||||| || | || | Sbjct 71920 TATACATTTCGGAGTGAACATTTTCCATGGCAATTTGGAAGCCATAGAAGCAACGGGCTT 71979 Query 24484 CGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCAC 24543 | || | || || ||| | || ||||| ||||||||||||| || || || ||| Sbjct 71980 CTGTCACTTGCACCTCTTGCGAGAAACGTTCAACTAAATTTTCATTGACAATACCATCAG 72039 Query 24544 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTAT 24603 ||| || ||||| |||| ||||| ||| ||||| ||| | ||||| | ||| Sbjct 72040 AGGCGGCGAAAAAGGCCAGAACATGAGATATGAAATAGCGTTCATTGTCTGTTAATCTAT 72099 Query 24604 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 24663 ||||||| | | ||||| || | ||| ||||||||||||||||||||||| ||||||| Sbjct 72100 CCCAATCAGTTAAGTCTTTGGAGAGATCAACTTCTTCCACTGTCCAAAATGAAGCCTCTG 72159 Query 24664 CCT 24666 ||| Sbjct 72160 CCT 72162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593569555319760