Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq9744 98.7 9e-16 seq9576 98.7 9e-16 seq7037 87.8 2e-12 >seq9744 Length=475756 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| ||| |||| || ||||| || ||||| |||||| ||| || || | Sbjct 177740 AATGCAAATTTTCGTCAAGACTTTGACAGGTAAAACTATTACCTTGGAAGTTGAGCCATC 177681 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| || | | || | ||| ||||| ||||| |||||| | ||| ||| || Sbjct 177680 AGATACCATAGAAAATGTCAAGGCCAAAATCCAGGATAAGGAAGGTATTCCCCCAGACCA 177621 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||| | | || || || ||||||||| | |||||| | || || |||||||||| Sbjct 177620 ACAGCGTTTGATTTTCGCTGGCAAACAATTAGAAGATGGCCGCACCTTGTCCGATTACAA 177561 Query 29141 TATTCAGAAGGAATCTACTCTTCA 29164 |||||| |||||||| || || || Sbjct 177560 TATTCAAAAGGAATCGACCCTACA 177537 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| ||| | ||||||||||| || || ||||| || ||| ||| || | Sbjct 178993 AATGCAAATTTTCGTTAAAACATTGACTGGAAAGACCATCACTTTGGAAGTGGAGCCATC 178934 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| || | | || | ||| ||||| ||||| |||||| | ||| ||| || Sbjct 178933 AGATACCATAGAAAATGTCAAGGCCAAAATCCAAGATAAGGAAGGTATTCCCCCAGACCA 178874 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 || | | || || || || |||||| | |||||| | || | |||||||||| Sbjct 178873 GCAGCGTTTGATTTTCGCTGGAAAACAATTAGAAGATGGCCGCACCTTATCCGATTACAA 178814 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 ||||||||||||||| ||||| || |||| |||| Sbjct 178813 TATTCAGAAGGAATCAACTCTGCATTTGGTCCTACG 178778 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| ||| | || || ||||| || ||||| |||||| ||| || || | Sbjct 178765 AATGCAAATTTTCGTTAAGACTTTGACAGGTAAAACTATTACCTTGGAAGTAGAGCCTTC 178706 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| || | | || | ||| ||||| ||||| |||||| | ||| ||| || Sbjct 178705 AGATACCATTGAAAATGTCAAGGCCAAAATCCAAGATAAGGAAGGTATTCCCCCAGACCA 178646 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 || | | || || || ||||||||| | |||||| | || | |||||||||| Sbjct 178645 GCAGCGTTTGATTTTCGCTGGCAAACAATTAGAAGATGGCCGCACCTTATCCGATTACAA 178586 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||| ||||| || ||| | || |||| |||| | || ||||| Sbjct 178585 TATTCAAAAGGAGTCAACTTTGCATTTGGTTCTACGTCTCCGTGGAGG 178538 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| ||| |||| || ||||| || ||||| |||||| ||| || || | Sbjct 179449 AATGCAAATTTTCGTCAAGACTTTGACAGGTAAAACTATTACCTTGGAAGTAGAGCCATC 179390 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| || | | || | ||| |||||| ||||| |||||| | ||| ||| || Sbjct 179389 AGATACCATAGAAAATGTCAAGGCAAAAATCCAAGATAAGGAAGGTATTCCCCCAGACCA 179330 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 || | | || || || ||||||||| | |||||| | || | | |||||||| Sbjct 179329 GCAGCGTTTGATTTTCGCTGGCAAACAATTAGAAGATGGCCGCACCTTATCTGATTACAA 179270 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGT 29170 |||||| ||||| || ||| | || |||| Sbjct 179269 TATTCAAAAGGAGTCAACTTTGCATTTGGT 179240 Score = 82.4 bits (90), Expect = 7e-11 Identities = 150/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| ||| |||| || ||||| || || ||||| || ||| ||| || | Sbjct 179221 AATGCAAATTTTCGTCAAGACTTTGACTGGAAAGACCATCACTTTGGAAGTGGAGCCATC 179162 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| || | | || | ||| ||||| ||||||||||| | ||| ||| || Sbjct 179161 AGATACCATAGAAAATGTCAAGGCCAAAATCCAGGATAAAGAAGGAATTCCCCCAGACCA 179102 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTAC 29138 || | | || || || |||||||| || |||||| || | ||| |||||||| Sbjct 179101 GCAGCGTTTGATTTTCGCTGGCAAACAGCTAGAAGATGGTCGTACCTTAT--CCGATTAC 179044 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 |||||||| ||||| || ||| | || |||| |||| Sbjct 179043 AATATTCAAAAGGAGTCAACTTTGCATTTGGTTCTACG 179006 >seq9576 Length=1569244 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 |||||||| || ||| | || || || || ||||||||||||||| || ||| || Sbjct 195423 AAAATGCAGATCTTCGTGAAGACTTTAACTGGCAAAACCATTACCTTGGAGGTGGAGCCT 195482 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 |||| || | | | |||| |||||| || |||||||| | || ||| Sbjct 195483 TCAGATACTATTGAAAACGTTAAAGCTAAAATTCAGGACAAAGAAGGCATTCCTCCAGAC 195542 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATT 29136 ||||||||||| |||||||| || || || || |||||| | | | ||| | |||| Sbjct 195543 CAACAAAGACTAATCTTTGCTGGTAAGCAGCTTGAAGATGGACGCACATTAT--CAGATT 195600 Query 29137 ACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 | ||||| ||||| ||||| || ||||| |||| | || || ||||||| Sbjct 195601 ATAATATCCAGAAAGAATCAACACTTCATTTGGTCCTTCGTCTAAGAGGAGG 195652 >seq7037 Length=35088 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135 ||||||||| || | || ||||| || |||||| |||||||| | ||| || | ||| Sbjct 23025 GATCAACAACGATTAATTTTTGCCGGAAAACAATTGGAAGATGGCCGAACATTGTCTGAT 22966 Query 29136 TACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || |||||||||||||| |||||| | || |||| | || ||||| ||||| Sbjct 22965 TATAATATTCAGAAGGAGTCTACTTTGCATTTGGTCCTGCGTTTACGTGGAGG 22913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428229050791985