Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq9744 111 1e-19 seq7037 87.8 1e-12 seq9576 84.2 2e-11 >seq9744 Length=475756 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| ||| |||| || ||||| || ||||| |||||| ||| || || | Sbjct 177740 AATGCAAATTTTCGTCAAGACTTTGACAGGTAAAACTATTACCTTGGAAGTTGAGCCATC 177681 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| || | | || ||||| ||||| ||||| |||||| | ||| ||| || Sbjct 177680 AGATACCATAGAAAATGTCAAGGCCAAAATCCAGGATAAGGAAGGTATTCCCCCAGACCA 177621 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||| | | || || || ||||||||||| |||||| | || || |||||||||| Sbjct 177620 ACAGCGTTTGATTTTCGCTGGCAAACAATTAGAAGATGGCCGCACCTTGTCCGATTACAA 177561 Query 25214 TATTCAAAAGGAATCTACTCTTCA 25237 ||||||||||||||| || || || Sbjct 177560 TATTCAAAAGGAATCGACCCTACA 177537 Score = 102 bits (112), Expect = 7e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| ||| | ||||||||||| || || ||||| || ||| ||| || | Sbjct 178993 AATGCAAATTTTCGTTAAAACATTGACTGGAAAGACCATCACTTTGGAAGTGGAGCCATC 178934 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| || | | || ||||| ||||| ||||| |||||| | ||| ||| || Sbjct 178933 AGATACCATAGAAAATGTCAAGGCCAAAATCCAAGATAAGGAAGGTATTCCCCCAGACCA 178874 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 || | | || || || || |||||||| |||||| | || | |||||||||| Sbjct 178873 GCAGCGTTTGATTTTCGCTGGAAAACAATTAGAAGATGGCCGCACCTTATCCGATTACAA 178814 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 |||||| |||||||| ||||| || |||| |||| Sbjct 178813 TATTCAGAAGGAATCAACTCTGCATTTGGTCCTACG 178778 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| ||| | || || ||||| || ||||| |||||| ||| || || | Sbjct 178765 AATGCAAATTTTCGTTAAGACTTTGACAGGTAAAACTATTACCTTGGAAGTAGAGCCTTC 178706 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| || | | || ||||| ||||| ||||| |||||| | ||| ||| || Sbjct 178705 AGATACCATTGAAAATGTCAAGGCCAAAATCCAAGATAAGGAAGGTATTCCCCCAGACCA 178646 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 || | | || || || ||||||||||| |||||| | || | |||||||||| Sbjct 178645 GCAGCGTTTGATTTTCGCTGGCAAACAATTAGAAGATGGCCGCACCTTATCCGATTACAA 178586 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||||||| || ||| | || |||| |||| | || ||||| Sbjct 178585 TATTCAAAAGGAGTCAACTTTGCATTTGGTTCTACGTCTCCGTGGAGG 178538 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| ||| |||| || ||||| || ||||| |||||| ||| || || | Sbjct 179449 AATGCAAATTTTCGTCAAGACTTTGACAGGTAAAACTATTACCTTGGAAGTAGAGCCATC 179390 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| || | | || ||||| |||||| ||||| |||||| | ||| ||| || Sbjct 179389 AGATACCATAGAAAATGTCAAGGCAAAAATCCAAGATAAGGAAGGTATTCCCCCAGACCA 179330 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 || | | || || || ||||||||||| |||||| | || | | |||||||| Sbjct 179329 GCAGCGTTTGATTTTCGCTGGCAAACAATTAGAAGATGGCCGCACCTTATCTGATTACAA 179270 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGT 25243 |||||||||||| || ||| | || |||| Sbjct 179269 TATTCAAAAGGAGTCAACTTTGCATTTGGT 179240 Score = 86.0 bits (94), Expect = 5e-12 Identities = 151/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| ||| |||| || ||||| || || ||||| || ||| ||| || | Sbjct 179221 AATGCAAATTTTCGTCAAGACTTTGACTGGAAAGACCATCACTTTGGAAGTGGAGCCATC 179162 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| || | | || ||||| ||||| ||||||||||| | ||| ||| || Sbjct 179161 AGATACCATAGAAAATGTCAAGGCCAAAATCCAGGATAAAGAAGGAATTCCCCCAGACCA 179102 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCCAAAACTATGGCCGATTAC 25211 || | | || || || |||||||| | |||||| || | ||| |||||||| Sbjct 179101 GCAGCGTTTGATTTTCGCTGGCAAACAGCTAGAAGATGGTCGTACCTTAT--CCGATTAC 179044 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 |||||||||||||| || ||| | || |||| |||| Sbjct 179043 AATATTCAAAAGGAGTCAACTTTGCATTTGGTTCTACG 179006 >seq7037 Length=35088 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208 ||||||||| || | || ||||| || ||||||||||||||| | ||| || | ||| Sbjct 23025 GATCAACAACGATTAATTTTTGCCGGAAAACAATTGGAAGATGGCCGAACATTGTCTGAT 22966 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || |||||||| ||||| |||||| | || |||| | || ||||| ||||| Sbjct 22965 TATAATATTCAGAAGGAGTCTACTTTGCATTTGGTCCTGCGTTTACGTGGAGG 22913 >seq9576 Length=1569244 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 |||||||| || ||| | || || || || ||||||||||||||| || ||| || Sbjct 195423 AAAATGCAGATCTTCGTGAAGACTTTAACTGGCAAAACCATTACCTTGGAGGTGGAGCCT 195482 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 |||| || | | | | || |||||| || |||||||| | || ||| Sbjct 195483 TCAGATACTATTGAAAACGTTAAAGCTAAAATTCAGGACAAAGAAGGCATTCCTCCAGAC 195542 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCCAAAACTATGGCCGATT 25209 ||||||||||| |||||||| || || || | |||||| | | | ||| | |||| Sbjct 195543 CAACAAAGACTAATCTTTGCTGGTAAGCAGCTTGAAGATGGACGCACATTAT--CAGATT 195600 Query 25210 ACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 | ||||| || || ||||| || ||||| |||| | || || ||||||| Sbjct 195601 ATAATATCCAGAAAGAATCAACACTTCATTTGGTCCTTCGTCTAAGAGGAGG 195652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410694230072618