Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq10162 241 1e-58 seq10951 120 3e-22 seq9576 120 3e-22 seq9744 89.7 5e-13 >seq10162 Length=1180275 Score = 241 bits (266), Expect = 1e-58 Identities = 486/719 (68%), Gaps = 18/719 (3%) Strand=Plus/Minus Query 116655 AGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACT 116714 |||| ||||| || || ||||| || || || || || || ||||| ||| | || | Sbjct 72162 AGGCAGAGGCTTCATTTTGGACAGTGGAAGAAGTTGATCTCTCCAAAGACTTAACTGATT 72103 Query 116715 GGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCG 116774 |||| | || | ||||| || ||| ||||||| || || |||||||||||||||| Sbjct 72102 GGGATAGATTAACAGACAATGAACGCTATTTCATATCTCATGTTCTGGCCTTTTTCGCCG 72043 Query 116775 CCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGG 116834 || || || || ||||| || ||| | || || |||||| | || |||||||| ||| Sbjct 72042 CCTCTGATGGTATTGTCAATGAAAATTTAGTTGAACGTTTCTCGCAAGAGGTGCAAGTGA 71983 Query 116835 CCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGT 116894 | || || || |||||||| ||||| || || |||||||| || || ||||| ||||||| Sbjct 71982 CAGAAGCCCGTTGCTTCTATGGCTTCCAAATTGCCATGGAAAATGTTCACTCCGAAATGT 71923 Query 116895 ATTCGACCCTCATCGACACGTACGT--------GCGCTCTTCGGAGGAGAAGCTCCGTTT 116946 || | || ||||| || ||| | ||| || | | ||| || | Sbjct 71922 ATAGTATTCTGATCGATACATACATTAAGGACCGCGATC----AACGTGAATATC----T 71871 Query 116947 GTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTG 117006 || || ||||| || || ||||| ||| || |||||||||| ||||| || || Sbjct 71870 TTTCAATGCCATTGAAACAATGCCAGCCGTTAAGAAGAAGGCCGATTGGGCCTTGTCATG 71811 Query 117007 GATCGCCGGCAG-AGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGG 117065 ||| | ||| | ||| || || || || | | || || || ||||| |||| Sbjct 71810 GAT-TTCATCAGAATCGGCTAATTTTGGAGAACGTGTTATTGCGTTTGCTGCCGTTGAGG 71752 Query 117066 GCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGC 117125 | | || || || ||||| ||| |||| |||||||| |||||||| || || |||| Sbjct 71751 GTATATTTTTCAGCGGTAGTTTTGCCTCCATCTTTTGGCTTAAGAAACGTGGTCTAATGC 71692 Query 117126 CCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTG 117185 | ||| |||| ||| ||| || | ||||| | ||||| || ||||||| || |||| Sbjct 71691 CTGGCTTGACATTCTCCAATGAATTGATCTCGCGTGACGAAGGCTTGCATTGTGATTTTG 71632 Query 117186 CCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCG 117245 || || ||||||| || |||||||| ||| ||| | || | | || ||| Sbjct 71631 CCGTACTGATGTTCAAATATCTGGTGCAGAAACCCAGCAAAGAACGTATTATTGAAATCA 71572 Query 117246 TCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGC 117305 || || || || || || ||| ||||| || ||||| ||||| | | Sbjct 71571 TCCGAGATGCTGTAAAAATTGAACAGGAATTCCTAACTGAAGCTCTGCCATGTAATTTAA 71512 Query 117306 TGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTG 117364 | ||| | ||||| ||| |||||| |||| || || || || ||||| | |||||| Sbjct 71511 TTGGAATGAATTGTGAATTAATGTCGGAATATATTGAATTTGTTGCCGATCGTCTGCTG 71453 >seq10951 Length=171266 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40685 GAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAG 40744 |||||||||| || ||||| || || ||||| || || |||||||| | || ||||| Sbjct 140009 GAAAAATGCAGATCTTCGTCAAGACCCTCACCGGTAAGACCATCACTTTGGAGGTCGAGC 139950 Query 40745 CCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 | |||||| | | ||| |||||| || || | ||||| || || |||||| | | Sbjct 139949 CTTCCGACACCATTGAAAATGTCAAGGCTAAGATCCAAGACAAGGAAGGTATCCCCCCAG 139890 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 | || ||||| | |||| ||| || ||||| |||| || | |||||| | ||||| Sbjct 139889 ATCAACAACGTTTGATCTTCGCCGGTAAACAATTGGAAGATGGTCGCACCTTGTCCGACT 139830 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCAT 40893 |||||||||| ||||| |||| ||||| Sbjct 139829 ACAACATCCAAAAGGAATCCACCTTGCAT 139801 >seq9576 Length=1569244 Score = 120 bits (132), Expect = 3e-22 Identities = 151/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| |||||||| || || || |||||||||||||| | || || ||| | | Sbjct 196566 ATGCAAATCTTCGTAAAGACCCTGACTGGCAAAACCATCACATTGGAAGTAGAACCTTCT 196625 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | ||||| |||||| ||||||| ||||| || || || || | || || Sbjct 196626 GACACCATCGAAAACG-TCAAGGCCAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCA 196684 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| | || | || |||||||| |||| |||| ||||| || |||||| || Sbjct 196685 ACAACGTTTGATTTTTGCTGGCAAACAATTGGAGGACGGACGCACGCTTTCCGACTATAA 196744 Query 40869 CATCCAGAAGGAGGCCACGCTGCAT 40893 |||||||||||| | || || ||| Sbjct 196745 CATCCAGAAGGAATCTACACTCCAT 196769 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| |||||||| || || || |||||||||||||| | || || ||| | || Sbjct 196338 ATGCAAATCTTCGTAAAGACCCTGACTGGCAAAACCATCACATTGGAAGTTGAACCTTCC 196397 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | || ||||| |||||| ||||||| ||||| || || || || | || || Sbjct 196398 GATACTATTGAAAACG-TCAAGGCTAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCA 196456 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| ||||| ||| |||| || | || || | ||||| || Sbjct 196457 GCAGCGTTTGATCTTCGCCGGCAAGCAGTTGGAAGATGGTCGTACATTGTCTGACTATAA 196516 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||| || | || ||||| | || ||||| Sbjct 196517 CATCCAGAAAGAATCTACTTTGCATTTGGTCTTGCG 196552 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| |||||||| || | || |||||||| |||||| | || || ||| | || Sbjct 195882 ATGCAAATCTTCGTAAAGACCTTGACTGGCAAAACTATCACCTTGGAAGTTGAACCTTCC 195941 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | ||||| |||| | ||||||| ||||| || || || || | || || Sbjct 195942 GACACTATCGAAAACG-TCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCA 196000 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| | |||| ||| ||||| ||| |||| || | || || | ||||| || Sbjct 196001 ACAACGCTTGATCTTCGCCGGCAAGCAGTTGGAAGATGGTCGTACATTGTCTGACTATAA 196060 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||| || | || ||||| | || ||||| Sbjct 196061 CATCCAGAAAGAATCTACTTTGCATTTGGTCTTGCG 196096 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||||||||| | || |||||||| |||||| | || || ||| | || Sbjct 196110 ATGCAAATTTTCGTAAAAACCTTGACTGGCAAAACTATCACCTTGGAAGTTGAACCTTCC 196169 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | || ||||| |||||| || || | ||||| || || || || | || || Sbjct 196170 GATACTATTGAAAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGTATTCCTCCAGATCA 196228 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| | |||| ||| ||||| ||| |||| || | || || | |||||||| Sbjct 196229 ACAACGTTTGATCTTCGCCGGCAAGCAGTTGGAAGATGGTCGTACATTGTCTGACTACAA 196288 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||| || || | || ||||| | || ||||| Sbjct 196289 CATCCAAAAAGAATCTACTTTGCATTTGGTCTTGCG 196324 Score = 86.0 bits (94), Expect = 6e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| | || || || |||||||| | || || ||| | || Sbjct 195654 ATGCAGATTTTTGTTAAAACATTGACTGGAAAGACCATCACATTGGAAGTTGAACCTTCC 195713 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | ||||| |||| | ||||||| ||||| || || || || | || || Sbjct 195714 GACACTATCGAAAACG-TCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCA 195772 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || | |||| ||| ||||| ||| |||| || | || || | |||||||| Sbjct 195773 ACAGCGTTTGATCTTCGCCGGCAAGCAGTTGGAAGATGGTCGTACATTGTCTGACTACAA 195832 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||| || | || ||||| | || ||||| Sbjct 195833 CATCCAGAAAGAATCTACTTTGCATTTGGTATTGCG 195868 >seq9744 Length=475756 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| || || | || || || |||||||| | || || || |||| Sbjct 179221 AATGCAAATTTTCGTCAAGACTTTGACTGGAAAGACCATCACTTTGGAAGTGGA-GCCAT 179163 Query 40749 C-GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 | || | | | ||| |||||| ||||| | || ||||| || || ||| | |||| Sbjct 179162 CAGATACCATAGAAAATGTCAAGGCCAAAATCCAGGATAAAGAAGGAATTCCCCCAGACC 179103 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || | || | ||| ||||||||||| || || | || ||| | ||| |||| Sbjct 179102 AGCAGCGTTTGATTTTCGCTGGCAAACAGCTAGAAGATGGTCGTACCTTATCCGATTACA 179043 Query 40868 ACATCCAGAAGGAGGCCACGCTGCAT 40893 | || || |||||| | || ||||| Sbjct 179042 ATATTCAAAAGGAGTCAACTTTGCAT 179017 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/208 (70%), Gaps = 6/208 (3%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| || || | || || || |||||||| | || || || ||| Sbjct 178309 AATGCAAATTTTCGTCAAGACTTTGACTGGAAAGACCATCACTTTGGAAGTGGA-GCCTT 178251 Query 40749 CG---ACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 || ||| || ||| | |||||| ||||| | || || || || || ||| | || Sbjct 178250 CGGATACAAT-TGAAAATG-TCAAGGCCAAAATCCAGGATAAGGAAGGAATTCCCCCAGA 178193 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| || | || | ||| ||||||||||| || || | || ||| | || || Sbjct 178192 CCAGCAGCGTTTGATTTTCGCTGGCAAACAGCTAGAAGATGGTCGTACCTTATCTGATTA 178133 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCAT 40893 |||||| ||||||||| | || ||||| Sbjct 178132 CAACATTCAGAAGGAGTCAACTTTGCAT 178105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515087258803120