Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq9576 107 2e-18 seq9744 98.7 9e-16 seq10186 91.5 1e-13 >seq9576 Length=1569244 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | ||| ||||| || | ||||| ||||| || |||||||| || Sbjct 195882 TACCACCACGCAGACGCAATACCAAATGCAAAGTAGATTCTTTCTGGATGTTGTAGTCAG 195823 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || || || ||| || | ||| || || ||| |||| | |||||| ||||| |||| Sbjct 195822 ACAATGTACGACCATCTTCCAACTGCTTGCCGGCGAAGATCAAACGCTGTTGATCTGGAG 195763 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || ||||||||| |||||| ||| || | ||||| ||||| | || | Sbjct 195762 GAATACCTTCCTTGTCTTGAATTTTAGCTTTGACGTTTTCGATAGTGTCGGAAGGTTCAA 195703 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | || | || || || |||| ||||| |||||||||||||| Sbjct 195702 CTTCCAATGTGATGGTCTTTCCAGTCAATGTTTTAACAAAAATCTGCAT 195654 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| || | | ||| ||||| || | ||||| ||||| || ||||| || || Sbjct 196566 TACCTCCACGCAGACGCAAGACCAAATGCAAAGTAGATTCTTTCTGGATGTTATAGTCAG 196507 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || || || ||| || | ||| || || ||| |||| | |||||||||||| |||| Sbjct 196506 ACAATGTACGACCATCTTCCAACTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAG 196447 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || ||||||||| |||||| || || | ||| | || || | || | Sbjct 196446 GAATACCTTCCTTGTCTTGAATTTTAGCCTTGACGTTTTCAATAGTATCGGAAGGTTCAA 196387 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | || | |||||||| ||||| || ||||| || || ||||| Sbjct 196386 CTTCCAATGTGATGGTTTTGCCAGTCAGGGTCTTTACGAAGATTTGCAT 196338 >seq9744 Length=475756 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | || ||||| ||||||||||||||||| | || || ||| || Sbjct 179468 ACCAAATGCAAAGTTGACTCCTTTTGAATGTTGTAATCAGATAAGGTACGACCATCTTCC 179527 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | |||||||| ||| | || | |||||| || || ||||| ||||| |||||||| | Sbjct 179528 AATTGTTTTCCGGCGAAAATTAAACGCTGTTGGTCTGGAGGAATGCCTTCCTTGTCCTGA 179587 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 ||||| ||| || | ||| | || |||| || ||||| | || | || ||| Sbjct 179588 ATTTTAGCTTTTACATTTTCAATTGTATCCGAAGGTTCCACCTCCAATGTAATTGTCTTG 179647 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||| || || || || |||||||| Sbjct 179648 CCGGTCAAGGTCTTCACGAAGATCTGCAT 179676 >seq10186 Length=270785 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 132867 ACGGTTTCGACGTCGACGGTAAACTTTGTGGCCTGAGCGGCGGGTTTTGTGCGCAAATAA 132926 |||| | ||| || || ||||||| |||| | || || || ||||| || |||||| Sbjct 27518 ACGGCTACGA--TCCACCGTAAACTGAATGGCATTGGCCGCAGGCTTTGTTCGTAAATAA 27575 Query 132927 TACATGCCCGTTTTCAGTTTTTTCTCCCACGCGTAAAAGTGTATGCTCGACACCACCGAG 132986 ||||||||||| || || || ||| | || || |||||| | || | Sbjct 27576 TACATGCCCGTCTTGAGGCCAGCCTTCCAGGAATAGAAATGTATGGAAGTCAATTTTCCG 27635 Query 132987 TAAGTGGGTTCGGCGACAAATAAATTCAGCGATTGACTCTGATCTATGAAAGGAGCACGG 133046 ||| |||||||||| || || ||| | ||||||||||||||| ||||| | |||| Sbjct 27636 TAATTGGGTTCGGCTACGTGTATATTAAACGATTGACTCTGATCGATGAAGGCCCCACGA 27695 Query 133047 TCGGCGGCCATGTTTAT 133063 ||||||||||| || || Sbjct 27696 TCGGCGGCCATTTTGAT 27712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433722078921004