Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq9744 113 7e-20 seq7037 111 2e-19 seq11241 105 1e-17 seq9576 93.3 6e-14 >seq9744 Length=475756 Score = 113 bits (124), Expect = 7e-20 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | ||| | || |||||||| | ||| ||||| || ||||| ||||| | Sbjct 178764 TTCCACCACGAAGACGTAGGACCAAATGCAGAGTTGATTCCTTCTGAATATTGTAATCGG 178823 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | | || | || ||| ||||||||||||||||| |||||||| | ||||| || || | Sbjct 178824 ATAAGGTGCGGCCATCTTCTAATTGTTTTCCAGCGAAAATCAAACGCTGCTGGTCTGGGG 178883 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 |||| ||||| |||||||| |||||||| || | Sbjct 178884 GAATACCTTCCTTATCTTGGATTTTGGCCTTGACATTTTCTATGGTATCTGATGGCTCCA 178943 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 |||| | ||||| || || || || |||||||||| ||| ||||||||| Sbjct 178944 CTTCCAAAGTGATGGTCTTTCCAGTCAATGTTTTAACGAAAATTTGCATT 178993 Score = 111 bits (122), Expect = 2e-19 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATC 146127 |||||||| ||||| || || ||| || ||||| ||||| || | || | || ||| || Sbjct 178556 ACCAAATGCAAAGTTGACTCCTTTTGA-ATATTGTAATCGGATAAGGTGCGGCCATCTTC 178614 Query 146128 TAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||||||| ||||| |||||||| | ||||| || || ||||| ||||| |||||||| Sbjct 178615 TAATTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGGGGAATACCTTCCTTATCTTG 178674 Query 146188 NNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTT 146247 ||||||||| |||||||| | || || ||||| Sbjct 178675 GATTTTGGCCTTGACATTTTCAATGGTATCTGAAGGCTCTACTTCCAAGGTAATAGTTTT 178734 Query 146248 ACCTGTTAATGTTTTAATGAATATTTGCATT 146278 |||||| || || |||| ||| ||||||||| Sbjct 178735 ACCTGTCAAAGTCTTAACGAAAATTTGCATT 178765 Score = 107 bits (118), Expect = 3e-18 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCT 146107 ||||||| | ||| | | |||||||| ||||| || || ||| || ||||| ||||| Sbjct 179220 TTCCACCACGAAGACGGAGAACCAAATGCAAAGTTGACTCCTTTTGA-ATATTGTAATCA 179278 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 || | || | || ||| ||||||||||| ||||| |||||||| | ||||| || || Sbjct 179279 GATAAGGTGCGGCCATCTTCTAATTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGG 179338 Query 146168 GGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCT 146227 ||||| ||||| |||||||| |||||||| ||| Sbjct 179339 GGAATACCTTCCTTATCTTGGATTTTTGCCTTGACATTTTCTATGGTATCTGATGGCTCT 179398 Query 146228 ACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 ||||| | || || ||||||||||| || || || | ||| ||||||||| Sbjct 179399 ACTTCCAAGGTAATAGTTTTACCTGTCAAAGTCTTGACGAAAATTTGCATT 179449 Score = 96.9 bits (106), Expect = 5e-15 Identities = 107/140 (76%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCT 146107 ||||||| | ||| | || |||||||| ||||| || || ||| || ||||| ||||| Sbjct 178992 TTCCACCACGAAGACGTAGAACCAAATGCAAAGTTGACTCCTTTTGA-ATATTGTAATCG 179050 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 || | || | | ||| |||| ||||| ||||| |||||||| | ||||| || || Sbjct 179051 GATAAGGTACGACCATCTTCTAGCTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGG 179110 Query 146168 GGAATTCCTTCTTTATCTTG 146187 ||||||||||||||||| || Sbjct 179111 GGAATTCCTTCTTTATCCTG 179130 Score = 89.7 bits (98), Expect = 8e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| || | ||| | || |||||||| ||||| || || || ||||||||||| | Sbjct 178308 TTCCTCCACGAAGACGTAGGACCAAATGCAAAGTTGACTCCTTTTGGATATTATAATCCG 178367 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | | || | | ||| |||| ||||| ||||| |||||||| | ||||| || || | Sbjct 178368 ACAACGTACGACCATCTTCTAGCTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCAGGGG 178427 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||| ||||| |||||||| Sbjct 178428 GAATACCTTCCTTATCTTG 178446 Score = 84.2 bits (92), Expect = 3e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | ||| | || |||||||| ||||| || || || || || ||||| | Sbjct 178080 TTCCACCACGAAGACGTAGGACCAAATGCAAAGTTGACTCCTTCTGAATGTTGTAATCAG 178139 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | | || | | ||| |||| ||||| ||||| |||||||| | ||||| || || | Sbjct 178140 ATAAGGTACGACCATCTTCTAGCTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGGG 178199 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||||||||| ||||| || Sbjct 178200 GAATTCCTTCCTTATCCTG 178218 >seq7037 Length=35088 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||| |||||||| || || ||||||||||| || | |||| || ||| || Sbjct 22931 ACCAAATGCAAAGTAGACTCCTTCTGAATATTATAATCAGACAATGTTCGGCCATCTTCC 22990 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||||||||| |||||||| |||| ||| |||||||| |||||||| ||||| || || Sbjct 22991 AATTGTTTTCCGGCAAAAATTAATCGTTGTTGATCCGGTGGAATTCCCTCTTTGTCCTG 23049 >seq11241 Length=117455 Score = 105 bits (116), Expect = 1e-17 Identities = 234/351 (67%), Gaps = 0/351 (0%) Strand=Plus/Minus Query 10344 GCAGGAATGGATTTAAAAAGTGCATATGATTATATTGTTTCAGCACATGATAAAAAATTA 10403 ||||| ||||||| |||||| || ||| |||| | |||| || || || Sbjct 51316 GCAGGGCTGGATTTGCGAAGTGCTTACGATCTGGTTGTACCGGCACGTGGCAAGGCTTTG 51257 Query 10404 ATAAAAACTGATTTAATTATAGAAATTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGA 10463 | ||||||||| | || ||| |||| || || | ||||| | | ||||| | Sbjct 51256 GTGAAAACTGATCTTCAAATCGAAGTTCCAAATGGTTCTTATGGTCGCATTGCTCCACGT 51197 Query 10464 TCTGATTTAGCTCTAAATAAATTTATTGATATTGGAGCTGGAGTAATTGACGAAGATTAT 10523 || | ||||| | || || ||||| ||| | || ||||| ||| | |||||||||||| Sbjct 51196 TCCGGATTAGCAGTTAAGAATTTTATCGATGTCGGCGCTGGGGTAGTCGACGAAGATTAT 51137 Query 10524 AGAGGAAATGTGGGAGTAATATTATTTAATCATTCTAATGAAGATTTTATAATAAATAGA 10583 | || || | || || || |||| ||||| || ||| || ||| | | || | Sbjct 51136 CGCGGCAACCTTGGTGTGGTACTATTCAATCACTCCGATGCCGAATTTGAAGTTAAACGT 51077 Query 10584 GGAGATAGAATATCTCAATTAATATGTGAAAAAATTTTATATCCTAAAATGTTAAAAGTC 10643 ||||||||||| | ||||||||||||||| || || || || | | ||||| Sbjct 51076 GGAGATAGAATTGCACAATTAATATGTGAACGCATATTCTACCCCGGGCTTGAACAAGTC 51017 Query 10644 GATAGTTTATCAGAAACAAAAAGATCTGATTTTGGTTTTGGATCTACTGGT 10694 |||| || |||||| ||| || ||| |||||||| || || ||| Sbjct 51016 GATAAATTGGAAGAAACTAAACGAGGTGACGCAGGTTTTGGTTCAACGGGT 50966 >seq9576 Length=1569244 Score = 93.3 bits (102), Expect = 6e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||| | |||||||| || || ||||| || ||||| || | | || || Sbjct 196774 ACCAAATGGAGTGTAGATTCCTTCTGGATGTTATAGTCGGAAAGCGTGCGTCCGTCCTCC 196715 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||| |||||||||||||| | ||| ||||| |||||||| ||||| || ||||| Sbjct 196714 AATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTGTCTTG 196656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743335992183040