Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq10162 235 5e-57 >seq10162 Length=1180275 Score = 235 bits (260), Expect = 5e-57 Identities = 560/835 (67%), Gaps = 16/835 (2%) Strand=Plus/Plus Query 15943 TTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATT 16002 |||||| ||||||| ||| | |||||||||||||||||| || || |||||||| | Sbjct 71336 TTTTTGGTATTCACCCACTTTGCGTTCAAAGAAATTTGTTTTACCATCCAATGAAATCAT 71395 Query 16003 TTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCG-CATCCCAATTCCAACA 16061 |||||| || ||||||||||| | | ||| ||| | ||||| ||||| | || Sbjct 71396 TTCCATGAAGGGGAAAGGATTTTTGGTATTGTAGATTTTGCCAACATCC-AATTCAACCA 71454 Query 16062 ATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTA 16121 | | ||| || |||||||| ||||| | |||||| ||||| |||||||| |||| Sbjct 71455 GCAGACGATCGGCAACAAATTCAATATATTCCGACATTAATTCACAATTCATTCCAATTA 71514 Query 16122 ATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTA 16181 | ||| || | ||||| |||| || | | ||| || || || || || ||| | Sbjct 71515 AATTACATGGCAGAGCTTCAGTTAGGAATTCCTGTTCAATTTTTACAGCATCTCGGATGA 71574 Query 16182 TATCTCTTACTACACTATTTAACGGAGGGTTTA---ATAAG-TGTTTAAACATTA-TACA 16236 | || | | ||| | ||| | |||||| | || | ||| ||||| | ||| Sbjct 71575 TTTCAATAA-TACGTTCTTT---GCTGGGTTTCTGCACCAGATATTTGAACATCAGTACG 71630 Query 16237 AGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACC 16296 ||||||||||||||||| |||||||| | || || || || || ||||| | || Sbjct 71631 -GCAAAATCACAATGCAAGCCTTCGTCACGCGAGATCAATTCATTGGAGAATGTCAAGCC 71689 Query 16297 TGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATAT 16356 |||||||| || ||||| |||| |||||| || | |||||| ||| || ||||| Sbjct 71690 AGGCATTAGACCACGTTTCTTAAGCCAAAAGATGGAGGCAAAACTACCGCTGAAAAATAT 71749 Query 16357 ACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGT--TCTAtttttactttct 16414 ||| ||||| || ||||| |||| | || || || | | | ||| | | | Sbjct 71750 ACCCTCAACGGCAGCAAACGCAATAACACGTTCTCCAAAATTAGCCGATTCTGA--TGAA 71807 Query 16415 atccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTA 16474 |||||| ||||||| || || | ||||| ||| | || || ||||| Sbjct 71808 ATCCATGACAAGGCCCAATCGGCCTTCTTCTTAACGGCTGGCATTGTTTCAATGGCATTG 71867 Query 16475 AATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATT 16534 || | ||| | || | || || ||| || ||||| || || | |||||||||| Sbjct 71868 AAAAGATATTCACGTTGATCGCGGTCCTTAATGTATGTATCGATCAGAATACTATACATT 71927 Query 16535 TCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATT 16594 || || |||| ||| ||||| || || || || ||||| ||||| | ||||| | | | Sbjct 71928 TCGGAGTGAACATTTTCCATGGCAATTTGGAAGCCATAGAAGCAACGGGCTTCTGTCACT 71987 Query 16595 TGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCA 16654 || || || | || | ||| |||| ||||| || || || ||||| || || Sbjct 71988 TGCACCTCTTGCGAGAAACGTTCAACTAAATTTTCATTGACAATACCATCAGAGGCGGCG 72047 Query 16655 AAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGTCA 16714 ||||| || || | || || |||| ||| || |||| | | | ||| ||| Sbjct 72048 AAAAAGGCCAGAACATGAGATATGAAATAGCGTTCATTGTCTGTTAATCTATCCCAATCA 72107 Query 16715 GAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCT 16769 | || ||||| || | ||| || ||||| || |||||||| ||||| | |||| Sbjct 72108 GTTAAGTCTTTGGAGAGATCAACTTCTTCCACTGTCCAAAATGAAGCCTCTGCCT 72162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462393556458200