Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq10820 163 2e-35 >seq10820 Length=150301 Score = 163 bits (180), Expect = 2e-35 Identities = 484/735 (66%), Gaps = 10/735 (1%) Strand=Plus/Plus Query 20044 TTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTATTATGG 20103 ||||| ||||| || || |||||||||||||||| || |||||||| || || |||||| Sbjct 111621 TTTCCTTTATTGACAACTAAACGGGTATTTTGGAGAGCAGTTGTTGAGGAATTGTTATGG 111680 Query 20104 TTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAGATTTGGAGC 20163 || | || | || ||| | | || | || ||| | | || ||| Sbjct 111681 TTCACACGTGGCTGCACTAATGCAAAGGAATTACAGGACAAAAATATCCACATCTGGGAT 111740 Query 20164 GCACATGGATCTAAGCAATTTTTACACAGCAATGGATTTGACA-ACCGTCAAGAGGGGGA 20222 | | | || |||||||| | | ||| ||| ||| | ||| ||||||| || Sbjct 111741 GGTAACAGTACTCGCGAATTTTTAGATAAGCTTGGCTTT-ACAGATCGTAAAGAGGGCGA 111799 Query 20223 TTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGACATGA- 20281 | ||||||| || |||||||| |||||| | |||||||| || ||||| || || Sbjct 111800 TCTGGGTCCGGTATATGGATTCCAATGGCGTCATTTTGGTGCAAAATATCGC-ACTTGTG 111858 Query 20282 ACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATTAAAA 20341 || ||||| | ||| |||| ||| | |||||| || | ||| | Sbjct 111859 ACGATGATTATACCAATGAGGGAATAGACCAACTTGCAAATGTAATCCACACAATACGCA 111918 Query 20342 C-GAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCTTTA 20400 | || ||| | | |||| | ||||| | ||| |||||| ||| ||| | | |||| Sbjct 111919 CAGATCCCGATAG-CAGACGCATTATAATGACCGCTTGGAACCCTAGCGATATACATTTA 111977 Query 20401 ATGGCTTTGCCTCCATGTCATATGCTATGCC--AATTTTACGTTGCTAATAATGAATTGT 20458 |||||| | || ||||| ||| || |||| | ||||||| || || ||| ||||||||| Sbjct 111978 ATGGCTCTACCACCATGCCAT-TG-TATGGCTCAATTTTATGTGGCAAATGATGAATTGT 112035 Query 20459 CGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAA 20518 | ||||| || ||||| ||||||||||||||||| ||||| |||||||| || Sbjct 112036 CCTGTCAGCTGACCCAACGTAGTGCTGATATGGGACTGGGCGTTCCATTCAATATCGCCT 112095 Query 20519 GTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGACTTAG 20578 ||| || || | || ||||||||||| || | |||| | | ||| | || || || Sbjct 112096 CTTACGCTTTGTTAACTTATATGATTGCCCACATAACAGGTCTTAAACCAGGCGATTTTA 112155 Query 20579 TCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTAAAATTACAGT 20638 | ||| | | || || | ||| | || | ||||| | ||||| ||||| |||| Sbjct 112156 TTCACTCATTGGGTGATACACATGTCTATTTAAATCACGTTGAACCATTAAAGGAGCAGT 112215 Query 20639 TAACACGACAACCAAAACAATTCCCAACTCTTCGCATTACTCGAACTGTTAAAGATATTA 20698 | | ||| ||||| | || |||| | || | || | |||| |||||| Sbjct 112216 TGAAACGTGAACCACGTAAGTTTCCAAAATTAATAATCAAGCGTAAAGTTACGGATATTG 112275 Query 20699 ACGATTTTAAAGCTGATGATTTTGTGTTAGAAGGTTATAATCCCCATAATTCAATTCCAA 20758 | || || ||| || ||||||| | | || ||||| || || ||||| | Sbjct 112276 AGGACTTCAAATTCGAAGATTTTGAAATTGTTGGCTATAACCCGTATCCGAAAATTCATA 112335 Query 20759 TGGAAATGTCTGTTT 20773 |||||||| | |||| Sbjct 112336 TGGAAATGGCCGTTT 112350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399084329618215