Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq9744 120 2e-22 seq10951 100 2e-16 seq9576 98.7 8e-16 >seq9744 Length=475756 Score = 120 bits (132), Expect = 2e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTC-GTTCAGTTGGCGATCGTCGTC 45186 ||||| |||| || |||||| ||||||||||| || | | || | ||| | || || Sbjct 179468 ACCAAATGCAAAGTTGACTCCTTTTGAATGTTGTAATCAGATAAGGTA-CGACCATCTTC 179526 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 || ||||||||||||||| || || ||||||||||| ||||| | || ||||||||| Sbjct 179527 CAATTGTTTTCCGGCGAAAATTAAACGCTGTTGGTCTGGAGGAATGCCTTCCTTGTCCTG 179586 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 |||||| || || | | | ||| | |||||||||| ||||| ||||| Sbjct 179587 AATTTTAGCTTTTACATTTTCAATTGTATCCGAAGGTTCCACCTCCAATGTAATTGTCTT 179646 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 ||| |||| |||||||| ||||| ||||| || Sbjct 179647 GCCGGTCAAGGTCTTCACGAAGATCTGCATTTT 179679 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTC-GTTCAGTTGGCGATCGTCGTC 45186 ||||| |||| || |||||||||||||||||| || | | || | ||| | || || Sbjct 178100 ACCAAATGCAAAGTTGACTCCTTCTGAATGTTGTAATCAGATAAGGT-ACGACCATCTTC 178158 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 || ||||| || ||||| ||||| ||||| ||||| || || | || ||||| ||| Sbjct 178159 TAGCTGTTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGGGGAATTCCTTCCTTATCCTG 178218 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 ||||| ||| || | | | ||| | |||||| |||| || || ||||| Sbjct 178219 GATTTTGGCCTTGACATTTTCAATTGTATCCGAAGGCTCCACTTCCAAAGTGATGGTCTT 178278 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| |||||| || || |||||||| Sbjct 178279 TCCAGTCAAAGTCTTGACGAAAATTTGCAT 178308 >seq10951 Length=171266 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 45127 TACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186 |||||| |||| ||| ||||| || |||||||||||| || |||| | || || Sbjct 139795 TACCAAATGCAAGGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCATCTTC 139854 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 || |||||| |||||||| ||||| || ||||| || || || | ||| |||||||| Sbjct 139855 CAATTGTTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGGATACCTTCCTTGTCTTG 139914 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 || || ||| || | | | |||| | ||| ||||||| || || ||||| Sbjct 139915 GATCTTAGCCTTGACATTTTCAATGGTGTCGGAAGGCTCGACCTCCAAAGTGATGGTCTT 139974 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 || || || ||||| || ||||| ||||| || Sbjct 139975 ACCGGTGAGGGTCTTGACGAAGATCTGCATTTT 140007 >seq9576 Length=1569244 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| || || || |||||||| ||||| |||||| || ||| |||| ||| Sbjct 196774 ACCAAATGGAGTGTAGATTCCTTCTGGATGTTATAGTCGGAAAGCGTGCGTCCGTCCTCC 196715 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | |||||| || || || ||||| || ||||| || ||||| | ||| |||||||| | Sbjct 196714 AATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTGTCTTGA 196655 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||| || | | | |||| | || || |||| || || || ||| Sbjct 196654 ATTTTGGCCTTGACGTTTTCGATGGTGTCAGAAGGTTCTACTTCCAATGTGATGGTTTTG 196595 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| ||||| || ||||||||||| Sbjct 196594 CCAGTCAGGGTCTTTACGAAGATTTGCAT 196566 Score = 82.4 bits (90), Expect = 6e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 |||||||| |||| || || ||||| ||||||||||| || | ||| | || Sbjct 195865 AATACCAAATGCAAAGTAGATTCTTTCTGGATGTTGTAGTCAGACAATGTACGACCATCT 195806 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 |||| || || |||||||| ||||| |||||||| || ||||| | ||| |||||||| Sbjct 195805 TCCAACTGCTTGCCGGCGAAGATCAAACGCTGTTGATCTGGAGGAATACCTTCCTTGTCT 195746 Query 45245 GCAATTTT 45252 |||||| Sbjct 195745 TGAATTTT 195738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394976555525227