Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq10162 224 1e-53 >seq10162 Length=1180275 Score = 224 bits (248), Expect = 1e-53 Identities = 559/834 (67%), Gaps = 26/834 (3%) Strand=Plus/Plus Query 13904 ACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGT 13963 |||||| |||||| ||||||| ||| | ||||||||| || |||||||| |||| | Sbjct 71328 ACGCCCCATTTTTGGTATTCACCCACTTTGCGTTCAAAGAAATTTGTTTTACCATCCAAT 71387 Query 13964 GATATATTTTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGT 14023 || || ||||||| || || |||||| | | | | | ||| || | | | | Sbjct 71388 GAAATCATTTCCATGAAGGGGAAAGGATTTTTGGTATTGTAGATTTTGCCAACATCCAAT 71447 Query 14024 TCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATA 14083 || | || | | ||| |||| || |||||||||| |||||||| ||||||||||| Sbjct 71448 TCAACCAGCAGACGATCGGCAACAAATTCAATATATTCCGACATTAATTCACAATTCATT 71507 Query 14084 CCTATTAGTTTTACAGGAATTATATTG-GTTAAAAATTCTTTTTCTATAGACACAGCCTC 14142 || |||| || ||| | | || |||| ||||| | ||| || ||||| || Sbjct 71508 CCAATTAAATT-ACATGGCAGAGCTTCAGTTAGGAATTCCTGTTCAATTTTTACAGCATC 71566 Query 14143 GTTTATAATAATCGTAATAATTTCATTAGAAGGAGGATATTTT----AGATGTTTAAAAA 14198 || || ||||| ||| || | || | | | |||| ||| || | Sbjct 71567 TCGGATGATTTCAATAATACGTTCTTT----GCTGGGTTTCTGCACCAGATATTTGAACA 71622 Query 14199 TTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATG 14258 | | |||||||||||||| | ||| || || | || | ||| || || |||| Sbjct 71623 TCAGTACGGCAAAATCACAATGCAAGCCTTCGTCACGCGAGATCAATTCATTGGAGAATG 71682 Query 14259 TTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAA 14318 | || || ||||| | || ||||| || | |||||| || | || || ||| | Sbjct 71683 TCAAGCCAGGCATTAGACCACGTTTCTTAAGCCAAAAGATGGAGGCAAAACTACCGCTGA 71742 Query 14319 AGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTT-TG 14377 | ||||| |||||||| ||||||||||| || | ||||||||||| || || || Sbjct 71743 AAAATATACCCTCAACGGCAGCAAACGCAATAACACGTTCTCCAAAATTAGCCGATTCTG 71802 Query 14378 TTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATA 14437 | || |||||| ||||| || | || || |||| |||||||||||| Sbjct 71803 AT-GAAATCCATGACAAGGCCCAATCGGCCTTCTTCTTAACGGCTGGCATTGTTTCAATG 71861 Query 14438 GCATTAAATAAATGTTCCTTCTCTTTA--GTACTTGAAATGTATGTATCAATAAGTAAGC 14495 ||||| || | || ||| | | || ||| |||||||||||| || || | | Sbjct 71862 GCATTGAAAAGATATTCACGTTGATCGCGGTCCTT--AATGTATGTATCGATCAGAATAC 71919 Query 14496 TATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTT 14555 |||||||||| ||||| | |||||||| || || || || ||||| || || | |||| Sbjct 71920 TATACATTTCGGAGTGAACATTTTCCATGGCAATTTGGAAGCCATAGAAGCAACGGGCTT 71979 Query 14556 CTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCAC 14615 ||| | ||| |||||| | || | ||| | ||||||||||| || ||||||||| Sbjct 71980 CTGTCACTTGCACCTCTTGCGAGAAACGTTCAACTAAATTTTCATTGACAATACCATCAG 72039 Query 14616 TAGCTGCAAAAAATGCC--AATATGTTTTTAATAAAGTATTGCTCTTCATTG-CTG--AG 14670 || || ||||| ||| || ||| | || || || || ||||||| ||| | Sbjct 72040 AGGCGGCGAAAAAGGCCAGAACATGAGAT--ATGAA--ATAGC-GTTCATTGTCTGTTAA 72094 Query 14671 TTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14724 | | | |||||| | ||| || || || ||||| ||||| || ||||||||||| Sbjct 72095 TCTATCCCAATCAGTTAAGTCTTTGGAGAGATCAACTTCTTCCACTGTCCAAAA 72148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482222077321160